DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TBPH and Rbp9

DIOPT Version :9

Sequence 1:NP_001163280.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_001259974.1 Gene:Rbp9 / 33498 FlyBaseID:FBgn0010263 Length:684 Species:Drosophila melanogaster


Alignment Length:575 Identity:131/575 - (22%)
Similarity:200/575 - (34%) Gaps:176/575 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 YAYFCVFPKENKRKSDD-----NLENSTAK---TKRIETRLRCTDLIVLGLPWKTTEESLREYFE 128
            |.:.....:|:..|:.:     .|:|.|.|   .:.....::..:|.|.|||...|:..|...|.
  Fly   153 YGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGLPKNMTQSDLESLFS 217

  Fly   129 TYGEVLMAQIKKDTKSGQSKGFGFVRF-------------------------------------- 155
            .||:::.::|..|..:|.|||.||:||                                      
  Fly   218 PYGKIITSRILCDNITGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITVKFANNPSSNKN 282

  Fly   156 -----GSYDAQMRVLTNR-------------------HLIDGRWCEV----------KVPNSKGM 186
                 .:|.|.......|                   |...||:..|          .:.|....
  Fly   283 SMQPLAAYIAPQNTRGGRAFPANAAAGAAAAAAAAAIHPNAGRYSSVISRYSPLTSDLITNGMIQ 347

  Fly   187 GHQVPCK---VFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPF-----RAFSFVTFLDPDVA-- 241
            |:.:...   :||.....|...:.|.:.|..||.|..|.:.|..     :.|.|||..:.:.|  
  Fly   348 GNTIASSGWCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVL 412

  Fly   242 --QSLCGEDHIIKGVSVHVSNAAPKAEQNRNQQ-------VQSYNYN------SANSFGMHSYHP 291
              |||.|  :.:....:.||     .:.|:|:|       ....|.|      :||...:|::| 
  Fly   413 AIQSLNG--YTLGNRVLQVS-----FKTNKNKQTXLLTKLAAVVNANAAAAALAANGLVLHNHH- 469

  Fly   292 QGNHMNPGRNGHHRGNNQHNAHGGENAIVPNNHNIGTAGYGMGGNNYGGNSGGGYHNNGGNHSSG 356
              :|.|.|    ...||.:|::|           ...|.:.:|  .|..:|.....:|..|.:| 
  Fly   470 --HHSNIG----SINNNSNNSNG-----------CSAAAFPLG--KYVNHSSNNRQHNINNSTS- 514

  Fly   357 GNTNRQDGGSQYNSRQSNFHGMNQPHN--GNVGGSNGWMNRGHLDMPNLQALGINSQGSSSSN-- 417
             ||::|...|..|.:||    |..|..  .:...:.|       |:....|...:|...|:|:  
  Fly   515 -NTSKQKPASTSNKQQS----MAPPKRLASSTAATTG-------DLAATAATNSSSSSHSASSGD 567

  Fly   418 ------QGQNMSNQSMLNLNSLPINPALV-AAALNQWSLVGNQLQNQNQDQQGGNFLSWMA---- 471
                  ...:.|:.|..|.|.|..:...: ....||:.|:..|||.|   |:...||:.:|    
  Fly   568 AGATGTAASSSSSSSSTNNNILKTSTKFIYNKPQNQYELLQQQLQLQ---QEFAQFLTNVANSAA 629

  Fly   472 ---QNGGHNNAN--NFGGRKGPN-NPNNNPAANGIKTDNSEPQNGNTG----WSN 516
               .||..|:.|  |.||..|.. ..:.|.|..|....||   |||.|    |||
  Fly   630 TPSSNGSANSTNQRNGGGTIGMGLGMSANSAGGGSGNKNS---NGNNGYMPTWSN 681

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_001163280.1 RRM1_TDP43 108..184 CDD:240767 28/147 (19%)
RRM2_TDP43 192..261 CDD:240768 21/80 (26%)
Rbp9NP_001259974.1 ELAV_HUD_SF 107..438 CDD:273741 59/291 (20%)
RRM1_Hu 109..186 CDD:241094 7/32 (22%)
RRM2_Hu 196..274 CDD:241096 20/77 (26%)
RRM3_Hu 355..432 CDD:240823 21/83 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439643
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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