DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and ssx

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_569908.1 Gene:ssx / 31086 FlyBaseID:FBgn0024987 Length:485 Species:Drosophila melanogaster


Alignment Length:402 Identity:96/402 - (23%)
Similarity:143/402 - (35%) Gaps:136/402 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 ENKRKSDDN--LENSTAKTKRIE--TRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKD 141
            |.:..|.||  .:||..:.::::  .|...|:||:..||...|:..|...|...|.:...:|.:|
  Fly    63 EEQHHSQDNEGNDNSAGQQQQMQQVDRTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRD 127

  Fly   142 TKSGQSKGFGFVRF----GSYDAQMRV----LTNRHLIDGRWCEVKVPNSKGMGHQV-PCKVFVG 197
            .|:|.|.|:|||.:    .|.||..::    :.|:.|        ||..::..|..: ...::|.
  Fly   128 FKTGYSFGYGFVDYKTESDSEDAIQKLNGFYVRNKRL--------KVSYARPGGQSIKDTNLYVI 184

  Fly   198 RCTEDINSDDLREYFSKFGEVT------DVFIPRPFRAFSFVTFLDPDVAQSLCGEDHIIKGVSV 256
            ..:.:||.|.|...||.:|.:.      |....|| |..:||.:...:.||      ..||.   
  Fly   185 NLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRP-RGVAFVRYNKREEAQ------EAIKA--- 239

  Fly   257 HVSNAAPK----------AEQNRNQQVQSY-------------------------------NYNS 280
             ::|..|:          ||::...:...:                               |::.
  Fly   240 -LNNTVPEGGSQPIWVRLAEEHGKAKAAQFMAQIGGGNGGGGGGPPHMGPGGPMHPPHHHNNHHH 303

  Fly   281 ANSFGMH---------------SYHPQ---------GNHMNPGRNGHHRGNNQHNAH--GGEN-- 317
            .|....|               .:|||         .||.|...|.||..||.:|.|  ||.:  
  Fly   304 NNHHNPHMPPHHHQPQHPHQHPQHHPQLHHMQHHHPNNHNNNHPNNHHHNNNNNNHHNMGGPHPH 368

  Fly   318 ---AIVPNNHNIGTA-----GYGMGGNNYGGNSGGGYHNNGGNHSSGGNTNRQDGGSQYNSRQSN 374
               .:.|...|:|..     |.|||...:||..|||    ||....||               .|
  Fly   369 HMQQMHPMGMNMGMGVNMGMGMGMGMPIHGGGGGGG----GGGGGGGG---------------GN 414

  Fly   375 FHGMNQPHNGNV 386
            ||.|  .|.|.|
  Fly   415 FHHM--AHRGEV 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 23/80 (29%)
RRM2_TDP43 192..261 CDD:409761 18/74 (24%)
ssxNP_569908.1 sex-lethal <76..272 CDD:273740 51/214 (24%)
Blue background indicates that the domain is not in the aligned region.

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