DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and Tardbp

DIOPT Version :9

Sequence 1:NP_001163280.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:XP_006239444.1 Gene:Tardbp / 298648 RGDID:1310906 Length:414 Species:Rattus norvegicus


Alignment Length:540 Identity:211/540 - (39%)
Similarity:283/540 - (52%) Gaps:152/540 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DFVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFPPSVE 66
            ::::|:|:|.|||||:|:|:|||:||||:.|||||:|||:|||..::.:||||..||.|..|  :
  Rat     3 EYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHAP--D 65

  Fly    67 SGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYG 131
            :|||...|...:||:||||.|:...:|..|.||...  :.:|||||||||||||:.|::||.|:|
  Rat    66 AGWGNLVYVVNYPKDNKRKMDEADASSAVKVKRAVQ--KTSDLIVLGLPWKTTEQDLKDYFSTFG 128

  Fly   132 EVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEVKVPNSKGMGHQVP----- 191
            ||||.|:|||.|:|.|||||||||..|:.|::|::.||:||||||:.|:||||    |.|     
  Rat   129 EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSK----QSPDEPLR 189

  Fly   192 -CKVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDVAQSLCGEDHIIKGVS 255
             .||||||||||:.:::|:::|.::|||.|||||:|||||:||||.|..|||||||||.||||:|
  Rat   190 SRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLCGEDLIIKGIS 254

  Fly   256 VHVSNAAPKAEQNRNQQVQSYNYNSANSFGMHSYHPQGNHMNPGRNGHHRGNNQHNAHGGENAIV 320
            ||:|||.||  .|.|:|::     .:..||          .|||..|:..|..  |:.||     
  Rat   255 VHISNAEPK--HNSNRQLE-----RSGRFG----------GNPGGFGNQGGFG--NSRGG----- 295

  Fly   321 PNNHNIGTAGYGMGGNNYGGNSGGGYHNNGGNHSSGGNTNRQDGGSQYNSRQSNFHGMNQPHNGN 385
                     |.|: |||.|||.|||                                        
  Rat   296 ---------GAGL-GNNQGGNMGGG---------------------------------------- 310

  Fly   386 VGGSNGWMNRGHLDMPNLQALGINSQGSSSSNQGQNMSNQSMLNLNSLPINPALVAAA----LNQ 446
                                                      :|..:..||||::|||    .:.
  Rat   311 ------------------------------------------MNFGAFSINPAMMAAAQAALQSS 333

  Fly   447 WSLVGNQLQNQNQDQQGGNFLSW--------MAQNGGHN--NANNFGGRKGPNNPNNNPAANGIK 501
            |.::|.....|||....||..|.        .|...|:|  :.:|.|...|..:.:|..:.:|. 
  Rat   334 WGMMGMLASQQNQSGPSGNNQSQGSMQREPNQAFGSGNNSYSGSNSGAPLGWGSASNAGSGSGF- 397

  Fly   502 TDNSEPQNGNTGWSNQSSGS 521
                   ||..|.|..|..|
  Rat   398 -------NGGFGSSMDSKSS 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_001163280.1 RRM1_TDP43 108..184 CDD:240767 51/75 (68%)
RRM2_TDP43 192..261 CDD:240768 47/68 (69%)
TardbpXP_006239444.1 TDP43_N 4..77 CDD:408471 40/74 (54%)
RRM1_TDP43 105..178 CDD:409760 49/72 (68%)
RRM2_TDP43 191..261 CDD:409761 48/69 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166354249
Domainoid 1 1.000 91 1.000 Domainoid score I7561
eggNOG 1 0.900 - - E1_28HBV
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H134087
Inparanoid 1 1.050 333 1.000 Inparanoid score I2333
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1425837at2759
OrthoFinder 1 1.000 - - FOG0005498
OrthoInspector 1 1.000 - - otm44960
orthoMCL 1 0.900 - - OOG6_105367
Panther 1 1.100 - - LDO PTHR48033
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3916
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1413.800

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