Sequence 1: | NP_001163280.1 | Gene: | TBPH / 37781 | FlyBaseID: | FBgn0025790 | Length: | 531 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_006239444.1 | Gene: | Tardbp / 298648 | RGDID: | 1310906 | Length: | 414 | Species: | Rattus norvegicus |
Alignment Length: | 540 | Identity: | 211/540 - (39%) |
---|---|---|---|
Similarity: | 283/540 - (52%) | Gaps: | 152/540 - (28%) |
- Green bases have known domain annotations that are detailed below.
Fly 2 DFVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFPPSVE 66
Fly 67 SGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYG 131
Fly 132 EVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEVKVPNSKGMGHQVP----- 191
Fly 192 -CKVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDVAQSLCGEDHIIKGVS 255
Fly 256 VHVSNAAPKAEQNRNQQVQSYNYNSANSFGMHSYHPQGNHMNPGRNGHHRGNNQHNAHGGENAIV 320
Fly 321 PNNHNIGTAGYGMGGNNYGGNSGGGYHNNGGNHSSGGNTNRQDGGSQYNSRQSNFHGMNQPHNGN 385
Fly 386 VGGSNGWMNRGHLDMPNLQALGINSQGSSSSNQGQNMSNQSMLNLNSLPINPALVAAA----LNQ 446
Fly 447 WSLVGNQLQNQNQDQQGGNFLSW--------MAQNGGHN--NANNFGGRKGPNNPNNNPAANGIK 501
Fly 502 TDNSEPQNGNTGWSNQSSGS 521 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
TBPH | NP_001163280.1 | RRM1_TDP43 | 108..184 | CDD:240767 | 51/75 (68%) |
RRM2_TDP43 | 192..261 | CDD:240768 | 47/68 (69%) | ||
Tardbp | XP_006239444.1 | TDP43_N | 4..77 | CDD:408471 | 40/74 (54%) |
RRM1_TDP43 | 105..178 | CDD:409760 | 49/72 (68%) | ||
RRM2_TDP43 | 191..261 | CDD:409761 | 48/69 (70%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166354249 | |
Domainoid | 1 | 1.000 | 91 | 1.000 | Domainoid score | I7561 |
eggNOG | 1 | 0.900 | - | - | E1_28HBV | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H134087 | |
Inparanoid | 1 | 1.050 | 333 | 1.000 | Inparanoid score | I2333 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D1425837at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0005498 | |
OrthoInspector | 1 | 1.000 | - | - | otm44960 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_105367 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR48033 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X3916 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
14 | 13.800 |