DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and RBM34

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_055829.2 Gene:RBM34 / 23029 HGNCID:28965 Length:430 Species:Homo sapiens


Alignment Length:347 Identity:69/347 - (19%)
Similarity:125/347 - (36%) Gaps:82/347 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 EPIELPA------------EEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFPPSV 65
            :|:.:|.            ||:.|..:....:|.|.. .:|.:...|.|.:.:...|..|....:
Human    68 QPVYVPVPKQTIKKTKRNEEEESTSQIERPLSQEPAK-KVKAKKKHTNAEKKLADRESALASADL 131

  Fly    66 ESGWGEYAYFCVFPKE-NKRKS-------------DDNLENSTAKTKRI-----ETRLRCTDLIV 111
            |..        :..|: .|||:             ||..:...::.|:|     |.||:....:.
Human   132 EEE--------IHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNERTVF 188

  Fly   112 LG-LPWKTTEESLREYFETYGEV-----------------LMAQIKKDTKSGQSKGFGFVRFGSY 158
            :| ||....::.|:.:|:.||::                 .:|.||:.....|.....:|.|...
Human   189 VGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEE 253

  Fly   159 DAQMRVL--TNRHLIDGRWCEVKVPNSKGMGHQVPCKVFVGRCTEDINSDDLREYFSKFGEVTDV 221
            .|..:.|  ....:.||  ..::|..:.....:....||||.....:....:.::|...|.:..|
Human   254 SAATQALKRNGAQIADG--FRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAV 316

  Fly   222 FIPRP-----FRAFSFVTFLDPD-VAQSLCGEDHIIKGVSVHVSNAAPK---AEQNRNQQV---- 273
            .|.|.     .:.|.:|.|.:.| |..:|...:..:.|..:.|..:..|   .:||.|.::    
Human   317 RIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVMRSVNKEKFKQQNSNPRLKNVS 381

  Fly   274 ---QSYNYNSANSFGMHSYHPQ 292
               |..|:.|..:.|    ||:
Human   382 KPKQGLNFTSKTAEG----HPK 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833 13/76 (17%)
RRM1_TDP43 108..181 CDD:409760 17/92 (18%)
RRM2_TDP43 192..261 CDD:409761 17/74 (23%)
RBM34NP_055829.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..55
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 72..123 9/51 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 134..153 4/26 (15%)
RRM1_RBM34 185..276 CDD:409828 17/92 (18%)
RRM2_RBM34 288..360 CDD:409829 16/71 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 365..395 7/29 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 411..430
Blue background indicates that the domain is not in the aligned region.

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