DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and msi-1

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_001369851.1 Gene:msi-1 / 175514 WormBaseID:WBGene00003423 Length:320 Species:Caenorhabditis elegans


Alignment Length:365 Identity:94/365 - (25%)
Similarity:141/365 - (38%) Gaps:98/365 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 SDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGF 150
            |||....|....|          :.:.||.|:||.|:||:||..:|||....:.:|..:.:::||
 Worm    34 SDDGSHGSQDPGK----------MFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGF 88

  Fly   151 GFVRFGSYDAQMRVLTNR-HLIDGRWCEVKVPNSKGMGHQVPC---KVFVGRCTEDINSDDLREY 211
            ||:.|....:..:||.|| |.:||:..:.||...|....::..   |||:|..:.....:|:::|
 Worm    89 GFITFVDPSSVDKVLNNREHELDGKKIDPKVAFPKRTQAKLVTKTKKVFIGGLSATSTLEDMKQY 153

  Fly   212 FSKFGEVTDVFI-----PRPFRAFSFVTFLDPDVAQSLCG-EDHIIKGVSVHVSNAAPKAEQNRN 270
            |..:|:|.|..:     .:..|.|.||||...:||..:|. ..|.|.|..|....|.||......
 Worm   154 FETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKAQPKEVMLPV 218

  Fly   271 QQVQSYNYNSANSFGM--------HSYHPQGNHMNPGRNGHHRGNNQHNAHGGENAIVPNNHNIG 327
            |..:|....:.|.:||        ..|.|:                    .|| |.:.||..|: 
 Worm   219 QLNKSRAAAARNLYGMPPETLLAYAQYLPR--------------------FGG-NLMYPNFTNV- 261

  Fly   328 TAGYGMGGNNYGGNSGGGYHNNGGNHSSGGNTNRQDGGSQYNSRQSNFHGMNQPHNGNVGGSNGW 392
                       ..|..|||   .|..:.||::||                  .||          
 Worm   262 -----------FNNMPGGY---SGLSTPGGSSNR------------------PPH---------- 284

  Fly   393 MNRGHLDMPNLQALGINSQGSSSSNQGQNMSNQSMLNLNS 432
                ..|..:|.:|  |:.|....:|.|...||...:.:|
 Worm   285 ----QFDTASLYSL--NNGGQLLDSQAQMFMNQQSYHSHS 318

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 27/73 (37%)
RRM2_TDP43 192..261 CDD:409761 23/77 (30%)
msi-1NP_001369851.1 RRM1_MSI 46..121 CDD:409990 29/84 (35%)
RRM2_MSI 135..208 CDD:240769 23/72 (32%)
Blue background indicates that the domain is not in the aligned region.

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