DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and rnp-5

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_001370330.1 Gene:rnp-5 / 175244 WormBaseID:WBGene00004388 Length:289 Species:Caenorhabditis elegans


Alignment Length:180 Identity:36/180 - (20%)
Similarity:64/180 - (35%) Gaps:36/180 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 KVFVGRCTEDINSDDLREYFSKFGEVTDVFIP------RPFRAFSFVTFLD-PDVAQSLCGEDHI 250
            :|.:...:.::....|.|.||.:|.:.:|.:|      ...|.:.:|.:.: .|..:|:   .|:
 Worm   134 RVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSI---KHM 195

  Fly   251 ----IKGVSVHVSNAAPKAEQNRNQQVQSYNYNSANSFGMHSYHPQGNHMNPGRNGHHRGNNQHN 311
                |.|::|||.....:         ||..:...:|.......|..:.|:|.|           
 Worm   196 DGGQIDGMAVHVEMTIGR---------QSVPFQRRSSPFRRRSPPPRDRMSPMR----------- 240

  Fly   312 AHGGENAIVPNNHNIGTAGYGMGGNNYGGNSGGGYHNNGGNHSSGGNTNR 361
             .||.:. .|:.......|.|.|.||........:.....:.|..|..:|
 Worm   241 -RGGRSP-PPHRRRSPMGGRGSGANNMPLGGPNRFRRASRSRSPAGRRSR 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760
RRM2_TDP43 192..261 CDD:409761 18/78 (23%)
rnp-5NP_001370330.1 RRM_RNPS1 135..208 CDD:409800 17/75 (23%)
Blue background indicates that the domain is not in the aligned region.

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