DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and Hnrnpa1

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_001034218.1 Gene:Hnrnpa1 / 15382 MGIID:104820 Length:373 Species:Mus musculus


Alignment Length:441 Identity:125/441 - (28%)
Similarity:175/441 - (39%) Gaps:90/441 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 STAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGS 157
            |.:::.:...:||  .|.:.||.::||:||||.:||.:|.:....:.:|..:.:|:|||||.:.:
Mouse     2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT 64

  Fly   158 ---YDAQMRVLTNRHLIDGRWCE----VKVPNSKGMG-HQVPCKVFVGRCTEDINSDDLREYFSK 214
               .||.|.  ...|.:|||..|    |...:|:..| |....|:|||...||.....||:||.:
Mouse    65 VEEVDAAMN--ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127

  Fly   215 FG--EVTDVFIPR---PFRAFSFVTFLDPD-VAQSLCGEDHIIKGVSVHVSNAAPKAEQNRNQQV 273
            :|  ||.::...|   ..|.|:||||.|.| |.:.:..:.|.:.|.:..|..|..|.|.......
Mouse   128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSS 192

  Fly   274 QSYNYNSANSFGMHSYHPQGNHMNPGRNGHHRGNNQHNAHGGENAIVPNNHNIGTAGYGMGGNNY 338
            |.....|.| ||.......|.:.|.||.|:..|   ....||..         |..|||..|:.|
Mouse   193 QRGRSGSGN-FGGGRGGGFGGNDNFGRGGNFSG---RGGFGGSR---------GGGGYGGSGDGY 244

  Fly   339 GGNSGGGYHNNGGNHSSGGNTNRQDGGSQYNSRQSNFHGMNQPHNGNVGGSNGWMNRGHLDMPNL 403
            .|....|.:..|....|||:.....||..|.::.|.:.|.....:.|.||..|....|.      
Mouse   245 NGFGNDGGYGGGSPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGGFGGGS------ 303

  Fly   404 QALGINSQGSSSSNQGQNMSNQSMLNLNSLPINPALVAAALNQWSLVGNQLQNQNQDQQGGNFLS 468
               |.|..|..|.|...|.:|||.   |..|:                          :||||  
Mouse   304 ---GSNFGGGGSYNDFGNYNNQSS---NFGPM--------------------------KGGNF-- 334

  Fly   469 WMAQNGGHNNANNFGGRKGPNNPNNNPAANGIKTDNSEPQNGNTGWSNQSS 519
                 ||.::....||.:....|.|              |.|..|.|:.||
Mouse   335 -----GGRSSGPYGGGGQYFAKPRN--------------QGGYGGSSSSSS 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 28/79 (35%)
RRM2_TDP43 192..261 CDD:409761 26/74 (35%)
Hnrnpa1NP_001034218.1 RRM1_hnRNPA1 12..92 CDD:410154 30/83 (36%)
RRM2_hnRNPA3 105..184 CDD:409996 27/78 (35%)
HnRNPA1 313..345 CDD:463312 13/67 (19%)
Blue background indicates that the domain is not in the aligned region.

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