DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and CSTF2

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_001293135.1 Gene:CSTF2 / 1478 HGNCID:2484 Length:597 Species:Homo sapiens


Alignment Length:427 Identity:90/427 - (21%)
Similarity:142/427 - (33%) Gaps:127/427 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 TAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSY 158
            |.:...::..||  .:.|..:|::.|||.|::.|...|.|:..::..|.::|:.||:||..:...
Human     5 TVRDPAVDRSLR--SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67

  Fly   159 D---AQMRVLTNRHL------IDGRWCEVKVPNSKGMGHQVPCKVFVGRCTEDINSDDLREYFSK 214
            :   :.||.|..|..      :|....|......|.:|...|  |......|.|:.:|..|..||
Human    68 ETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAP--VIESPYGETISPEDAPESISK 130

  Fly   215 F------------------------GEVTDVFIPRPFRAFSF------VTFLDPDVAQSLCGED- 248
            .                        .|..::.:..|..|::.      :..:||::|..:.... 
Human   131 AVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQT 195

  Fly   249 ---HIIKGVSVHVSNAAPKAEQNRNQQVQSYNYNSANSFGMHSYHPQGNHMN---PGRNGHHRGN 307
               .:|.|....|..|.|.:..|.:...|:.....|.|.|       |.|:|   |        .
Human   196 NIPTLIAGNPQPVHGAGPGSGSNVSMNQQNPQAPQAQSLG-------GMHVNGAPP--------L 245

  Fly   308 NQHNAHGGENAIVPNNHNIGTAGYGMGGNNYGGNSGGGYHNNGGNHSSGGNTNRQDGGSQYNSRQ 372
            .|.:..||    ||....:..|..|.|               .|:.:.||....|.|        
Human   246 MQASMQGG----VPAPGQMPAAVTGPG---------------PGSLAPGGGMQAQVG-------- 283

  Fly   373 SNFHGMNQPHNGNVGGSNGWMNRGHLDMPNLQALGINSQGSSSSNQGQNMSNQSMLNLNSLPINP 437
                   .|.:|.|.     |.||   ...||...:...|.:|..:.|            :|:..
Human   284 -------MPGSGPVS-----MERG---QGTLQHSPVGPAGPASIERVQ------------VPMQD 321

  Fly   438 ALVAAALNQWSLVGN------QLQNQNQDQQGGNFLS 468
            .  .||:.:.||..|      .|.:...|.:||..||
Human   322 P--RAAMQRGSLPANVPTPRGLLGDAPNDPRGGTLLS 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 21/81 (26%)
RRM2_TDP43 192..261 CDD:409761 16/102 (16%)
CSTF2NP_001293135.1 PABP-1234 4..352 CDD:130689 86/421 (20%)
RRM_CSTF2_CSTF2T 10..94 CDD:410072 22/85 (26%)
CSTF2_hinge 112..191 CDD:433869 12/78 (15%)
PHA03378 <253..455 CDD:223065 34/160 (21%)
CSTF_C 553..593 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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