DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and HNRNPA1L2

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_001011724.1 Gene:HNRNPA1L2 / 144983 HGNCID:27067 Length:320 Species:Homo sapiens


Alignment Length:107 Identity:23/107 - (21%)
Similarity:43/107 - (40%) Gaps:28/107 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   942 DESSAVDSNDSVDKR--QKHINGTYDQLQDLAERRRALLEDSICLFRFYRECDDFEKWIKDKEKM 1004
            ||::.:..|..:..|  .:.|..|.|..:|:.||...::..                 :.::|.:
Human    24 DEATILADNKCMCTRVTSRIIPSTEDPNEDIVERNIRIVVP-----------------LNNRENI 71

  Fly  1005 LRTDDPKGSVETARRQFETFVNDLSASSKRVEAIDSDVEDFV 1046
               .||...:   ||   .||..||...|:.:.::.::||.|
Human    72 ---SDPTSPL---RR---NFVYHLSDVCKKCDPVEVELEDQV 104

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760
RRM2_TDP43 192..261 CDD:409761
HNRNPA1L2NP_001011724.1 Globular A domain 4..94 20/95 (21%)
RRM1_hnRNPA1 12..92 CDD:410154 19/93 (20%)
Globular B domain 95..185 3/10 (30%)
RRM_SF 105..184 CDD:473069 23/107 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 181..216
RNA-binding RGG-box 218..240
HnRNPA1 255..292 CDD:463312
Nuclear targeting sequence. /evidence=ECO:0000250 268..305
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 271..320
Blue background indicates that the domain is not in the aligned region.

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