DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and Hnrnpd

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_001070733.1 Gene:Hnrnpd / 11991 MGIID:101947 Length:355 Species:Mus musculus


Alignment Length:377 Identity:99/377 - (26%)
Similarity:159/377 - (42%) Gaps:60/377 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 EEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFPPSVESGWGEYAYFCVFPKENKR 84
            |::|.::.:.  ||.|.            |..|..|..|.......|.|..|.....:  ..:|.
Mouse    25 EQEGAMVAAA--AQGPA------------AAAGSGSGGGGSAAGGTEGGSAEAEGAKI--DASKN 73

  Fly    85 KSDDNLENST------AKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTK 143
            :.|:...||:      |..:|.|.:     :.:.||.|.||::.|::||..:|||:...:|.|..
Mouse    74 EEDEGHSNSSPRHTEAAAAQREEWK-----MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPI 133

  Fly   144 SGQSKGFGFVRFGSYDAQMRVLTNR-HLIDGRWCEVKVPNSKGMGHQVPC-KVFVGRCTEDINSD 206
            :|:|:|||||.|...::..:|:..: |.::|:..:.|  .:|.|..:.|. |:|||..:.|...:
Mouse   134 TGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPK--RAKAMKTKEPVKKIFVGGLSPDTPEE 196

  Fly   207 DLREYFSKFGEVTDVFIP-----RPFRAFSFVTFLDPDVAQSLCGEDHIIKGVSVHVSNAAPKAE 266
            .:||||..||||..:.:|     ...|.|.|:||.:.:..:.:..:    |..:|.:|....|..
Mouse   197 KIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK----KYHNVGLSKCEIKVA 257

  Fly   267 QNRNQQVQSYNYNSANSFGMHSYHPQGNHMNPGRNGHHRGNNQHNAHGGENAIVPNNHNIGTAGY 331
            .::.|..|...:.|...|.             ||.....|....|.:.|.:    |..|.|...|
Mouse   258 MSKEQYQQQQQWGSRGGFA-------------GRARGRGGGPSQNWNQGYS----NYWNQGYGNY 305

  Fly   332 GMGGNNYGGNSGGGYHNNGGNHSSG-GNTNRQDGGSQYNSRQSNFHGMNQPH 382
            |.....|||.  |||...|.|:..| |:.:.|..|....||:.......:|:
Mouse   306 GYNSQGYGGY--GGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833 12/57 (21%)
RRM1_TDP43 108..181 CDD:409760 25/73 (34%)
RRM2_TDP43 192..261 CDD:409761 22/74 (30%)
HnrnpdNP_001070733.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..91 16/81 (20%)
CBFNT <60..78 CDD:311868 3/19 (16%)
RRM1_hnRNPD 99..172 CDD:410150 25/74 (34%)
RRM2_hnRNPD 183..257 CDD:241027 23/77 (30%)

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