DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and SNRNP35

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_851030.1 Gene:SNRNP35 / 11066 HGNCID:30852 Length:251 Species:Homo sapiens


Alignment Length:47 Identity:16/47 - (34%)
Similarity:28/47 - (59%) Gaps:0/47 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 LIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRF 155
            |.|..|..:|.|:.|:|.|..||::...::.:|..:|.|||:.|:.:
Human    58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEY 104

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 16/47 (34%)
RRM2_TDP43 192..261 CDD:409761
SNRNP35NP_851030.1 RRM_snRNP35 52..142 CDD:409683 16/47 (34%)
Blue background indicates that the domain is not in the aligned region.

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