DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and zcrb1

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_001107973.1 Gene:zcrb1 / 100135752 XenbaseID:XB-GENE-999756 Length:215 Species:Xenopus tropicalis


Alignment Length:159 Identity:40/159 - (25%)
Similarity:55/159 - (34%) Gaps:55/159 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 VLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQ---MRVLTNRHLID 172
            |..||:..|...|...|..||:|:...|.||..|.:|||..||.|...::.   :|.|.|:.|  
 Frog    14 VSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRRSKGVAFVLFLDKESSQNCVRGLNNKQL-- 76

  Fly   173 GRWCEVKVPNSKGMGHQVPCKVFV--GRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTF 235
                         .|..:...:.:  ||.||.|..   |.|..|            .|.:.    
 Frog    77 -------------FGRAIKASIAIDNGRATEFIRR---RNYTDK------------SRCYE---- 109

  Fly   236 LDPDVAQSLCGEDHIIKGVSVHVSNAAPK 264
                     ||:       :.|:|.|.||
 Frog   110 ---------CGD-------TGHLSYACPK 122

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 23/72 (32%)
RRM2_TDP43 192..261 CDD:409761 13/70 (19%)
zcrb1NP_001107973.1 RRM_ZCRB1 9..84 CDD:409827 24/84 (29%)
PTZ00368 <97..123 CDD:173561 11/61 (18%)
Blue background indicates that the domain is not in the aligned region.

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