DRSC/TRiP Functional Genomics Resources

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Protein Alignment gbb and ndr1

DIOPT Version :9

Sequence 1:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_571041.1 Gene:ndr1 / 799352 ZFINID:ZDB-GENE-990415-256 Length:392 Species:Danio rerio


Alignment Length:374 Identity:90/374 - (24%)
Similarity:135/374 - (36%) Gaps:134/374 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   152 ESDIIMTFLNKRHHNV-DELRHEHGRRLWFDVSNVPNDNYLVMAELRIYQNANEGKWLTANREFT 215
            |||.:::.:.|..|.| |:.      .:.||:|::...:.:..|||||       :......|..
Zfish    83 ESDSVLSLVAKSCHQVGDKF------AVTFDMSSISASDDVQRAELRI-------RLPHLRSELE 134

  Fly   216 ITVYAIGT---------------GTLGQHTMEPLSSVNTTGDYVGWLELNVTEGLHEWL------ 259
            :.:|...|               |||..:   |::|...:    .|...|:|..|..||      
Zfish   135 VDIYHASTPECERSPCEEVRVHLGTLNAN---PINSTFRS----SWRIFNITALLKYWLHQSERV 192

  Fly   260 -----------------------------VKSKDN------------HGIYI-------GAHAVN 276
                                         |.||.|            |..|:       |:..|.
Zfish   193 PFEEPTQMPPMAEGHKSVHHPTANRVMMVVYSKQNRAKTSTLIRTAEHSKYVALDRAGGGSEPVP 257

  Fly   277 RPDREVKLDDIGLIHRKVDDEFQPFMIGFFRGPELIKATAHSSHHRSKRSASHPRKRKKSVSPNN 341
            |..|.         :.:.||..:....|...|                  .||....||      
Zfish   258 RRHRR---------NHRTDDRVRDAAAGMIPG------------------VSHEGGEKK------ 289

  Fly   342 VPLLEPMESTRSCQMQTLYIDFKDLGWHDWIIAPEGYGAFYCSGECNFPLNAHMNATNHAIVQTL 406
             ||         |:...:::||..:||.|||:.|:.|.|:.|.|.|..|::.....||||.:|:|
Zfish   290 -PL---------CKKVDMWVDFDQIGWSDWIVYPKRYNAYRCEGSCPTPVDETFTPTNHAYMQSL 344

  Fly   407 VHLLEPKKVPKPCCAPTRLGALPVLYHLNDENVNLKKYRNMIVKSCGCH 455
            :.|..|.:||...|.||||..|.:||:.|.:.| ::.:..|:|..||||
Zfish   345 LKLHHPDRVPCLSCVPTRLAPLSMLYYENGKMV-MRHHEGMVVAECGCH 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 41/222 (18%)
TGFB 354..455 CDD:214556 39/100 (39%)
ndr1NP_571041.1 TGFb_propeptide 56..190 CDD:279078 29/126 (23%)
TGF_beta 291..391 CDD:278448 39/109 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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