DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gbb and gdf10b

DIOPT Version :9

Sequence 1:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_001165060.2 Gene:gdf10b / 794493 ZFINID:ZDB-GENE-120316-1 Length:385 Species:Danio rerio


Alignment Length:428 Identity:77/428 - (17%)
Similarity:126/428 - (29%) Gaps:196/428 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 PPAVEATQSGIYIDNGKDQTIMHRVLSEDDKLDVSYEILEFLGIAERPTHLSSHQLSLRKSAPKF 95
            |..|:.:|:.:.|.:...:.|.|.|:|.  ..||..||.|.|.:..                 .:
Zfish    67 PQTVKTSQTHLDISSYSSEAIDHYVVSV--TADVGQEISESLSVEF-----------------TY 112

  Fly    96 LLDVYHRITAEEGLSDQDEDDDYERGHRSRRSADLEEDEGEQQKNFITDLDKRAIDESDIIMTFL 160
            ..|.|:                 |:.|:                   ..||..|:|.|       
Zfish   113 STDFYN-----------------EKTHK-------------------CTLDFPAVDAS------- 134

  Fly   161 NKRHHNVDELRHEHGRRLWFDVSNVPNDNYLVMAELRIYQNANEGKWLTANREFTITVYAIGTGT 225
              .|.:|.|:..:|           |:         ..|:.|      :...||..|:....:.:
Zfish   135 --VHKDVIEVSFKH-----------PS---------AFYERA------SLEEEFEYTIILNPSSS 171

  Fly   226 LGQHTMEPLSSVNTTGDYVGWL---ELNVTEG-LHEWLVKSKDNHGIYIGAHA---VNRPDRE-- 281
            ...|..|. ||.:...|.:|:|   :::|.:. :.:|:|...:.....|..|.   |:.|..|  
Zfish   172 SVPHLQEK-SSHSCFEDELGYLCETKVHVNQSVVVQWVVLKFEGKIASIPVHTYKNVSVPQLEPA 235

  Fly   282 ---------VKLDDIGLIHRKVDDEFQPFMIGFF---------RGPELIK-----------ATAH 317
                     :....|.|:       |..|::.:|         :.|.:::           :...
Zfish   236 SAKTEWIAAILCGSIALL-------FIVFVVLWFIHKNFSKIPKVPSILRNIVTRPYSTPYSQPE 293

  Fly   318 SSHHRSKRSASHPRKRKKSVSP----NNVPLL--------------------EPMES-------- 350
            |.|..|..||:|        :|    ||.|||                    ||..|        
Zfish   294 SPHVSSMTSATH--------TPVLLYNNEPLLDFVHDEVSKTTDTLVNTEEEEPAPSEEEYDSSG 350

  Fly   351 ---------TRSCQMQTLYIDFKDLGWHDWIIAPEGYG 379
                     :..|.::....||           |||||
Zfish   351 GFGKSSDYDSPKCLLEMSPGDF-----------PEGYG 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 48/278 (17%)
TGFB 354..455 CDD:214556 8/26 (31%)
gdf10bNP_001165060.2 FN3 21..104 CDD:328772 12/38 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.