DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gbb and bmp3

DIOPT Version :9

Sequence 1:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_001071233.1 Gene:bmp3 / 777717 ZFINID:ZDB-GENE-030131-7192 Length:452 Species:Danio rerio


Alignment Length:401 Identity:103/401 - (25%)
Similarity:162/401 - (40%) Gaps:99/401 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 HLSSHQLSLRKSAPKFLLDVYHRITAEEGLSDQDEDDDYERGHRSRRSADLEED--EGEQQKNFI 142
            |.|||:.|..||..:                           |..||.|.:..|  .....||..
Zfish   124 HNSSHRCSKHKSCAQ---------------------------HNLRRQAHVHLDVWSFSLVKNTT 161

  Fly   143 TDLDKRAIDESDIIMTFLNKRHHNVDELRHEHGRRLWFDVSNVPN-----DNYLVMAELRIYQNA 202
            ..:....|:.|.:...|::.:               |.|::.|.|     |..|:  .:.|....
Zfish   162 RTIGHFPINISTMHWDFISWQ---------------WKDITRVVNQAKHHDQLLI--GININSRG 209

  Fly   203 NE-GKWLTANREFTITVYAIGTGTLGQHTMEPLSSVNTTGDYVGWLELNVTEGLHEWLVKSKDNH 266
            :: .|.|.::|...|.|||..:.     ..||.|.|:|...:...|..|    ||  :::|.:.:
Zfish   210 HQPWKKLLSDRSPYILVYANDSA-----ISEPESVVSTLQRHKSRLLPN----LH--MLESHNRN 263

  Fly   267 GIYIGAHAVNRPDREVKLDDIGLIHRKVDDEFQPFMIGFFRGPEL---IKATAHSSHH--RSKRS 326
                 |.|.:|..|...:             ..|.......|||.   |.....:|.:  ...::
Zfish   264 -----ASAQHRSRRSTNI-------------LLPLQNNELPGPEYPYEIPTWDEASPYDPMESKT 310

  Fly   327 ASHPRKRKKSVSPNNVPLLEPMEST------------RSCQMQTLYIDFKDLGWHDWIIAPEGYG 379
            ...|||:.:....:..|||:..|.|            |:|..:.|.:||.|:||.:|||:|:.:.
Zfish   311 VKRPRKKPRKNPRHKNPLLQFDEQTIKKARKKQWNEPRNCARRYLKVDFADIGWSEWIISPKSFD 375

  Fly   380 AFYCSGECNFPLNAHMNATNHAIVQTLVHLL-EPKKVPKPCCAPTRLGALPVLYHLNDENVNLKK 443
            |:||||.|.||:...:..:|||.:|::|..: ....:|:|||.|.::.:|.:|:...|:||.||.
Zfish   376 AYYCSGSCQFPMPKSLKPSNHATIQSIVRAVGVVPGIPEPCCVPEKMSSLSILFFDEDKNVVLKV 440

  Fly   444 YRNMIVKSCGC 454
            |.||.|.||.|
Zfish   441 YPNMTVDSCAC 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 46/232 (20%)
TGFB 354..455 CDD:214556 43/102 (42%)
bmp3NP_001071233.1 TGFB 350..452 CDD:214556 43/102 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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