DRSC/TRiP Functional Genomics Resources

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Protein Alignment gbb and LEFTY2

DIOPT Version :9

Sequence 1:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_003231.2 Gene:LEFTY2 / 7044 HGNCID:3122 Length:366 Species:Homo sapiens


Alignment Length:371 Identity:78/371 - (21%)
Similarity:128/371 - (34%) Gaps:126/371 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   150 IDESDI--IMTFLNKRHHNVDELRHEHGRR--------------------------LWFDV-SNV 185
            :|.:|:  ::...:.|...|..||..||.|                          |.|.: ..:
Human    43 LDRADMEKLVIPAHVRAQYVVLLRRSHGDRSRGKRFSQSFREVAGRFLASEASTHLLVFGMEQRL 107

  Fly   186 PNDNYLVMAELRIYQNA-------NEGKWLTANREFTITVYAIGTGTLGQHTMEPLSSVNTTGDY 243
            |.::.||.|.||::|..       ..|:....:.:..:||..:.....|.:....:.|...:...
Human   108 PPNSELVQAVLRLFQEPVPKAALHRHGRLSPRSAQARVTVEWLRVRDDGSNRTSLIDSRLVSVHE 172

  Fly   244 VGWLELNVTEGLHEWLVKSKDNHGIYIGAHAVNRPDREVKLDDIGLIHRKVDDEFQPFMIGFFRG 308
            .||...:|||.::.|              ..::||                            |.
Human   173 SGWKAFDVTEAVNFW--------------QQLSRP----------------------------RQ 195

  Fly   309 PELIKATAHSSHHRSKRSASHPRKRKKSV-SPNNV--PLLE-------------------PM-ES 350
            |.|::.:....|.....|.:|...|..|. :|..:  |.||                   || |.
Human   196 PLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTLDLRDYGAQGDCDPEAPMTEG 260

  Fly   351 TRSCQMQTLYIDFKDLGW-HDWIIAPEGYGAFYCSGECNFPLNAHMNATNHAIVQTLVHLLEPKK 414
            ||.|: |.:|||.:.:.| .:|::.|.|:.|:.|.|.|..|..|  .|.|.           |..
Human   261 TRCCR-QEMYIDLQGMKWAKNWVLEPPGFLAYECVGTCQQPPEA--LAFNW-----------PFL 311

  Fly   415 VPKPCCAPTRLGALPVLYHLND------ENVNLKKYRNMIVKSCGC 454
            .|:.|.| :...:||::..:.:      :.|:|.   ||.|:.|.|
Human   312 GPRQCIA-SETASLPMIVSIKEGGRTRPQVVSLP---NMRVQKCSC 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 31/190 (16%)
TGFB 354..455 CDD:214556 30/108 (28%)
LEFTY2NP_003231.2 TGFb_propeptide <106..214 CDD:307025 24/149 (16%)
TGF_beta 263..353 CDD:306518 29/107 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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