DRSC/TRiP Functional Genomics Resources

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Protein Alignment gbb and gdf6a

DIOPT Version :9

Sequence 1:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_001153466.1 Gene:gdf6a / 566470 ZFINID:ZDB-GENE-980526-373 Length:404 Species:Danio rerio


Alignment Length:393 Identity:108/393 - (27%)
Similarity:171/393 - (43%) Gaps:68/393 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 KFLLDVYHRITAEEGLSDQDEDDDYERGH----RSRRSADLEEDEGEQQKNFITDLDKRAIDESD 154
            |||.::   :.:..|.|.:|:..|....|    ...|:....|..|.....|      |:...::
Zfish    47 KFLKEI---LASSPGASRRDDFKDPVVPHDYMISIYRTYSAAEKLGLNASFF------RSSKSAN 102

  Fly   155 IIMTFLNKRHHNVDELRHEHGRR--LWFDVSNVPNDNYLVMAELRIYQNANEGKWLTANREFTIT 217
            .|.:|::|   ..|:|.....||  ..||||.:.:...||.|||||:            |:....
Zfish   103 TITSFVDK---GKDDLTLSPLRRQTYLFDVSTLSDKEELVGAELRIF------------RKSPGD 152

  Fly   218 VYAIGTGTLGQHTM-----EPLSSVNTTGDYVGWLELNVTEGLHEWLVKSKDNHGIYIGAHAVN- 276
            |....:|....|.:     .||:|.:        ::|..:... ||.|  .|..||:...|..| 
Zfish   153 VQPSPSGVYNLHLLSCRSERPLASRS--------IDLQDSRKA-EWEV--LDVWGIFKHRHQENQ 206

  Fly   277 ----------RPDREVKLDDIGLIHRKVDDEFQPFMIGFFRG----------PELIKATAHSSHH 321
                      :.|.|:.|..:|........:.:..::.:.|.          .|.||:.......
Zfish   207 LCLQLKVTYGKSDTEIDLKQLGFHRHSRTQQERAILVVYTRSKKRENLFNEMKEKIKSRGDDDEE 271

  Fly   322 RSKRSASHPRKRKKSVSPNNVPLLEPMESTRSCQMQTLYIDFKDLGWHDWIIAPEGYGAFYCSGE 386
            .|..... .|:|:::...|........:|...|..:.|:::||:|||.||||||..|.|::|.|.
Zfish   272 ESALQFK-ARRRRRTALNNRHGKRHGKKSKSRCSKKALHVNFKELGWDDWIIAPLDYEAYHCEGV 335

  Fly   387 CNFPLNAHMNATNHAIVQTLVHLLEPKKVPKPCCAPTRLGALPVLYHLNDENVNLKKYRNMIVKS 451
            |:|||.:|:..|||||:|||::.::|...|..||.||:|..:.:||..:..||..|:|.:|:|:.
Zfish   336 CDFPLRSHLEPTNHAIIQTLMNSMDPNSTPPSCCVPTKLSPISILYIDSGNNVVYKQYEDMVVEQ 400

  Fly   452 CGC 454
            |||
Zfish   401 CGC 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 51/232 (22%)
TGFB 354..455 CDD:214556 48/101 (48%)
gdf6aNP_001153466.1 TGFb_propeptide 57..245 CDD:279078 48/219 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 263..304 6/41 (15%)
TGFB 308..404 CDD:214556 47/96 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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