DRSC/TRiP Functional Genomics Resources

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Protein Alignment gbb and gdf2

DIOPT Version :9

Sequence 1:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_001165057.2 Gene:gdf2 / 563287 ZFINID:ZDB-GENE-100107-1 Length:389 Species:Danio rerio


Alignment Length:457 Identity:111/457 - (24%)
Similarity:175/457 - (38%) Gaps:156/457 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 IMHRVLSEDDKLDVSYEILEFLGIAE----RPTHLSSHQLSLRK-SAPKFLLDVYHRITAEEGLS 110
            |..:.|.|||.|:   ::..|||..:    |..:||......|| ..|:|::::|:|..:     
Zfish    35 IQEQKLVEDDDLN---KVESFLGFMKEDFLRKLNLSGVPQEHRKVQPPQFMIELYNRYAS----- 91

  Fly   111 DQDEDDDYERGHRSRRSADLEEDEGEQQKNFITDLDKRAIDESDIIMTFL-----------NKRH 164
                                               ||.:|..||:|.:|:           ||..
Zfish    92 -----------------------------------DKNSIPRSDVIRSFVVQDVIYSIRQGNKTQ 121

  Fly   165 HNVDELRHEHGRRLWFDVSNVPNDNYLVMAELRIYQNANEGKWLTANREFTITVYAI----GTGT 225
            |           ||.|:|| :||...:...:||::...:..|....:...:|.||.:    ....
Zfish   122 H-----------RLLFNVS-IPNHEEITSVQLRLFTLWHRHKPACDDLFTSINVYDVEYEQNAKI 174

  Fly   226 L----GQHTMEPLSSVNTTGDYVGWLELNVTEGLHEWLVKSKDNHGIYIGAHAVNRPDREVKLD- 285
            |    |:...|   |:||      |...:||..:..|              |...|...|:::: 
Zfish   175 LHLLDGRDVRE---SINT------WEAFDVTGAVRIW--------------HESRRGAGEIQVEV 216

  Fly   286 -------DIGLIHRKVDDEFQPFMIGFF------------RGPELIKATAHSSHHRSKRSASHPR 331
                   ||.|   .::|.....:|.|.            :..|::........:::..|..|.|
Zfish   217 QHSCDSFDISL---SLEDNSSAVVIVFSDDLGNRKEESMRKVKEMLVREQQQVGNQAPVSNRHRR 278

  Fly   332 KRKKSVSPNNVPLLEPMESTRSCQMQTLYIDFKDLGWHDWIIAPEGYGAFYCSGECNFPLNAHMN 396
            :::|  :.||.           |:..:|.::|||:||..||:||..|.|:.|.|.|.|||...::
Zfish   279 RKRK--AKNNY-----------CRRTSLKVNFKDIGWDKWIVAPPEYDAYECKGVCYFPLTDDVS 330

  Fly   397 ATNHAIVQTLVHLLEPKKVPKPCCAPTRLGALPVLY---------HLNDENVNLKKYRNMIVKSC 452
            .:.||::||||:|..|||....||.||:|..:.|:|         ||         |..|.|..|
Zfish   331 PSRHAVIQTLVNLSNPKKANMACCVPTKLDPIAVMYQEKGVITVRHL---------YEEMKVAKC 386

  Fly   453 GC 454
            ||
Zfish   387 GC 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 59/285 (21%)
TGFB 354..455 CDD:214556 44/110 (40%)
gdf2NP_001165057.2 TGFb_propeptide 60..222 CDD:279078 45/236 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 263..284 4/22 (18%)
TGF_beta 288..388 CDD:278448 42/108 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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