DRSC/TRiP Functional Genomics Resources

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Protein Alignment gbb and bmp4

DIOPT Version :9

Sequence 1:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_001017034.2 Gene:bmp4 / 549788 XenbaseID:XB-GENE-483058 Length:400 Species:Xenopus tropicalis


Alignment Length:467 Identity:126/467 - (26%)
Similarity:205/467 - (43%) Gaps:103/467 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 GMVLLMFVATTPPAVEATQSGIYI-DNGKDQTIMH----RVLSEDDKL--DVSYEILEFLGIAER 77
            |..:||.:......:..|.....| :.||.:.:..    |..::.::|  |....:|:..|:.:|
 Frog     4 GNRMLMVILLCQVLLGGTNHASLIPETGKKKVVAEIQGGRRSAQSNELLRDFEVTLLQMFGLRKR 68

  Fly    78 PTHLSSHQLSLRKSAPKFLLDVYHRITAEEGLSDQDEDDDYERGHRSRRSADLEEDEGEQQKNFI 142
            |      |.|.....|.::.|:|...:|||    :||..|..                       
 Frog    69 P------QPSKDVVVPAYMRDLYRLQSAEE----EDELHDIS----------------------- 100

  Fly   143 TDLDKRAIDESDIIMTFLNKRH-HNVDELRHEHGRRLWFDVSNVPNDNYLVMAELRIY-QNANEG 205
            .:..:|....::.:.:|.::.| .|:.........|..|::|::|.:..:..||||:| :..:.|
 Frog   101 MEYPERPTSRANTVRSFHHEEHLENLPSTAENGNFRFVFNLSSIPENEVISSAELRLYREQIDHG 165

  Fly   206 -KWLTANREFTITVYAIGTGTLGQHTMEPLSSVNTTGDYVG--------------WLELNVTEGL 255
             .|......  |.:|.:         |:|:::   :|..:.              |...:|:..:
 Frog   166 PAWEEGFHR--INIYEV---------MKPITA---SGHMISRLLDTRLIHHNVTQWESFDVSPAI 216

  Fly   256 HEWLVKSKDNHGIYIGAHAVNR----PDREVKLDDIGLIHRKVD-DEFQPFMIGFF---RGPELI 312
            ..|....:.|||:.|....:|:    ..:.|::....|.....| .:.:|.:|.|.   ||    
 Frog   217 IRWTRDKQINHGLAIEVVHLNQTKTYQGKHVRISRSLLPQEDADWSQMRPLLITFSHDGRG---- 277

  Fly   313 KATAHSSHHRSKRSASHPRKRKKSVSPNNVPLLEPMESTRSCQMQTLYIDFKDLGWHDWIIAPEG 377
                |:...|||||....|.|||:               :.|:..:||:||.|:||:|||:||.|
 Frog   278 ----HALTRRSKRSPKQQRPRKKN---------------KHCRRHSLYVDFSDVGWNDWIVAPPG 323

  Fly   378 YGAFYCSGECNFPLNAHMNATNHAIVQTLVHLLEPKKVPKPCCAPTRLGALPVLYHLNDENVNLK 442
            |.||||.|:|.|||..|:|:||||||||||:.:. ..:||.||.||.|.|:.:||....:.|.||
 Frog   324 YQAFYCHGDCPFPLADHLNSTNHAIVQTLVNSVN-SSIPKACCVPTDLSAISMLYLDEYDKVVLK 387

  Fly   443 KYRNMIVKSCGC 454
            .|:.|:|:.|||
 Frog   388 NYQEMVVEGCGC 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 53/288 (18%)
TGFB 354..455 CDD:214556 55/101 (54%)
bmp4NP_001017034.2 TGFb_propeptide 40..271 CDD:366248 51/277 (18%)
TGF_beta_SF 294..400 CDD:394804 58/122 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X157
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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