DRSC/TRiP Functional Genomics Resources

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Protein Alignment gbb and Lefty1

DIOPT Version :10

Sequence 1:NP_477340.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_001102550.1 Gene:Lefty1 / 498299 RGDID:1561867 Length:368 Species:Rattus norvegicus


Alignment Length:383 Identity:72/383 - (18%)
Similarity:129/383 - (33%) Gaps:143/383 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   145 LDKRAIDESDIIMTFLNKRHHNVDELRHEH-----------------GRRLWFDVSN-------- 184
            |||..: |..:|.:.:..::  |..|:|.|                 ||.|..:.|:        
  Rat    43 LDKADV-EGMVIPSHVRAQY--VALLQHSHDSRSRGKRFSQNFREVAGRFLVSETSSHLLVFGME 104

  Fly   185 --VPNDNYLVMAELRIYQNANEGKWLTANREFT-------ITVYAIGTGTLGQHTMEPLSSVNTT 240
              :|.::.||.|.||::|.......|...:..:       :|:..:.....|.:....:.|...:
  Rat   105 QRLPPNSELVQAVLRLFQEPVPRTALRRQKRLSPHSARARVTIEWLRFREDGSNRTALIDSRLVS 169

  Fly   241 GDYVGWLELNVTEGLHEWLVKSKDNHGIYIGAHAVNRPDREVKLDDIGLIHRKVDDEFQPFMIGF 305
            ....||...:|||.::.|              ..::||                           
  Rat   170 IHESGWKVFDVTEAVNFW--------------QQLSRP--------------------------- 193

  Fly   306 FRGPELIKATAHSSH--------HRSKRSASHPRKRKKSVSPNNVPLLEPM-------------- 348
             |.|.|::.:....|        |:..|.|:..       :|:...|.||.              
  Rat   194 -RQPLLLQVSVQREHLGPGTWSAHKLVRFAAQG-------TPDGKGLGEPQLELHTLDLKDYGAQ 250

  Fly   349 ----------ESTRSCQMQTLYIDFKDLGW-HDWIIAPEGYGAFYCSGECNFPLNAHMNATNHAI 402
                      |.||.|: |.:|:|.:.:.| .:||:.|.|:..:.|.|.|..|..:         
  Rat   251 GNCDPETPVTEGTRCCR-QEMYLDLQGMKWAENWILEPPGFLTYECVGSCLQPPES--------- 305

  Fly   403 VQTLVHLLEPKKVPKPCCAPTRLGALPVLYHLNDEN------VNLKKYRNMIVKSCGC 454
                :.:..|...|:.|.| :.:.:||::..:.::.      |:|.   ||.|:.|.|
  Rat   306 ----LTIRWPFLGPRQCVA-SEMTSLPLIVSIKEDGRTRPQVVSLP---NMRVQRCSC 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gbbNP_477340.1 TGFb_propeptide 45..305 CDD:459906 32/193 (17%)
TGF_beta_BMP5_like 353..455 CDD:381639 26/109 (24%)
Lefty1NP_001102550.1 TGFb_propeptide <62..203 CDD:480997 30/182 (16%)
TGF_beta_LEFTY1_2 264..355 CDD:381636 26/108 (24%)

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