DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gbb and gdf9

DIOPT Version :9

Sequence 1:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_001012383.1 Gene:gdf9 / 497643 ZFINID:ZDB-GENE-050221-7 Length:418 Species:Danio rerio


Alignment Length:256 Identity:69/256 - (26%)
Similarity:102/256 - (39%) Gaps:48/256 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   228 QHTMEPLSSVNTTGDYVGWLELNVTEGLHEWLVKSKDNHGIYIGAHAV----NRPDREVKLDDIG 288
            ||:: ||.|...   :..|:|::||..||..:...|.:..:.|....|    :||.        |
Zfish   181 QHSV-PLLSFRV---HHRWVEVDVTSFLHPLIQAHKKDIHLLINLTCVEDMISRPG--------G 233

  Fly   289 LIHRKVDDEFQPFMIGFFRGPELI------------------KATAHSSHHRSKRS-----ASHP 330
            .|| |...|..|      |.|.|:                  :....:|:|...:|     .|..
Zfish   234 QIH-KSPVELTP------RSPSLLLYLNDTSEVAYQRRSTQGRMVDLTSNHWDGKSTLWELTSRR 291

  Fly   331 RKRKKSVSPNNVPLLEPME--STRSCQMQTLYIDFKDLGWHDWIIAPEGYGAFYCSGECNFPLNA 393
            |:.....|..::|.|.||.  :|..|.:....:.||:|....|||.|:.|...||.|.|...:..
Zfish   292 RRGTLKSSETSMPKLVPMYEFTTDDCDLYDFRVSFKELKLDHWIIEPKKYNPRYCKGSCPRNVGF 356

  Fly   394 HMNATNHAIVQTLVHLLEPKKVPKPCCAPTRLGALPVLYHLNDENVNLKKYRNMIVKSCGC 454
            ...:..|.:||.|::......||:|.|.|:....|.||...||::...|:|..||...|.|
Zfish   357 MYGSPMHTMVQNLIYEKLDSSVPRPTCVPSEYNPLSVLTFENDKSYAYKEYEEMIATKCAC 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 22/80 (28%)
TGFB 354..455 CDD:214556 33/101 (33%)
gdf9NP_001012383.1 TGF_beta 317..417 CDD:278448 32/99 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.