DRSC/TRiP Functional Genomics Resources

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Protein Alignment gbb and amh

DIOPT Version :9

Sequence 1:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_001007780.1 Gene:amh / 493624 ZFINID:ZDB-GENE-050706-192 Length:549 Species:Danio rerio


Alignment Length:398 Identity:87/398 - (21%)
Similarity:148/398 - (37%) Gaps:113/398 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 YERGHRSRRSADLEED--EGEQQKNFITDLDK---RAIDESDI----IMTFLN-------KRHHN 166
            :..||...:...:.|.  :..::|..:::|::   |.:|.|..    ::.||:       |||..
Zfish   203 WSHGHIHLKLKTMVETSMDDNRRKLSVSELNEVLMRKVDGSSTTIKPVLLFLSDLDEPHLKRHRI 267

  Fly   167 VDELRHEHGRRLWFDVSNVPNDNYLVMAELRIYQN--ANEGKWLTANREFTITVYAIGTGTLGQH 229
            ..:.|             :|:..||.:.||:.:..  ..:.|..|...:.:    |:...||  |
Zfish   268 PQDER-------------LPSRTYLFLCELQKFLRDILPQSKSTTPQDDPS----AVSLDTL--H 313

  Fly   230 TMEPLSSVNTTGDYVGWLELNVTEGLHEWLVKS---------KDNHGIYIGAHAVNRPDREVKLD 285
            ::.||.           |.::.||.|...||.|         :...|:.  .|.|     ||.||
Zfish   314 SLPPLR-----------LGVSSTESLLSGLVNSSTPTVFVFPQRQQGLQ--THRV-----EVTLD 360

  Fly   286 D--IGLIHRKVDD--------EFQPFMIGFFRGPELIKATAHSSHHRSKRSASHPRKRKKSVSPN 340
            .  :.::..::|:        |....||.  |..:|.:.:|.|.......:|:   |..|.....
Zfish   361 SPLLSVLRMRLDEAMAQVKQQEAGRKMID--RLQKLTELSALSPDGEDSEAAT---KDHKEAQYR 420

  Fly   341 NVPLLEPM-------ESTRS----------------CQMQTLYIDFKDLGWHDWIIAPEGYGAFY 382
            :|.||:.:       ||.|:                |.:|:|.:..:     .:.:.|.......
Zfish   421 SVLLLKALQMVLSNWESERAQRAARADEDGPSASNQCHLQSLSVSLR-----KFFLEPSRANINN 480

  Fly   383 CSGECNFPLNAHMNATNHAIVQTLVHLLEPKKVPKP-CCAPTRLGALPVLYHLNDENVNLKKYRN 446
            |.|.|.||||   ||.|||::.. .|:...:.|.:. ||.|.....|.|: .|..|..|:....|
Zfish   481 CEGTCGFPLN---NANNHAVLLN-SHIQSGQPVNRSLCCVPVEYDDLCVI-ELESETTNISYKTN 540

  Fly   447 MIVKSCGC 454
            ::...|.|
Zfish   541 VVATKCEC 548

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 45/223 (20%)
TGFB 354..455 CDD:214556 29/102 (28%)
amhNP_001007780.1 AMH_N 74..439 CDD:282552 57/277 (21%)
TGF_beta 455..548 CDD:278448 28/102 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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