DRSC/TRiP Functional Genomics Resources

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Protein Alignment gbb and NODAL

DIOPT Version :9

Sequence 1:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_060525.3 Gene:NODAL / 4838 HGNCID:7865 Length:347 Species:Homo sapiens


Alignment Length:343 Identity:82/343 - (23%)
Similarity:141/343 - (41%) Gaps:68/343 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   141 FITDLDKRAIDESDIIMTFLNKRHHNVDELRHEHGRRLW---FDVSNVPNDNYLVMAELRIYQNA 202
            ::..|.:..:..:|||.: |......||      |:. |   ||.|.:.....|..||||:..::
Human    43 YMLSLYRDPLPRADIIRS-LQAEDVAVD------GQN-WTFAFDFSFLSQQEDLAWAELRLQLSS 99

  Fly   203 -----NEGKWL----------------TANREFTITVYAIGTGTLGQHTMEPLSSVNTTGDYVGW 246
                 .||...                :....|.:.::.:   ||.|.|..           :|.
Human   100 PVDLPTEGSLAIEIFHQPKPDTEQASDSCLERFQMDLFTV---TLSQVTFS-----------LGS 150

  Fly   247 LELNVTEGLHEWLVK--SKDNHGIYIGAHAVNRPDREVKLDDIGLIHRKVDDEFQPFMIGFFRGP 309
            :.|.||..|.:||..  :.:.....:......||......:.:.:::..:..|.:..      |.
Human   151 MVLEVTRPLSKWLKHPGALEKQMSRVAGECWPRPPTPPATNVLLMLYSNLSQEQRQL------GG 209

  Fly   310 ELIKATAHSSHHRSKRSAS---HPRKRKKSVSPNNVPLLEPMESTRSCQMQTLYIDFKDLGWHDW 371
            ..:...|.||....:...|   ..|.|:     :::|     :.::.|:.....:||..:||..|
Human   210 STLLWEAESSWRAQEGQLSWEWGKRHRR-----HHLP-----DRSQLCRKVKFQVDFNLIGWGSW 264

  Fly   372 IIAPEGYGAFYCSGECNFPLNAHMNATNHAIVQTLVHLLEPKKVPKPCCAPTRLGALPVLYHLND 436
            ||.|:.|.|:.|.|||..|:....:.||||.:|:|:...:|.:||..||||.:...|.:|| :::
Human   265 IIYPKQYNAYRCEGECPNPVGEEFHPTNHAYIQSLLKRYQPHRVPSTCCAPVKTKPLSMLY-VDN 328

  Fly   437 ENVNLKKYRNMIVKSCGC 454
            ..|.|..:::|||:.|||
Human   329 GRVLLDHHKDMIVEECGC 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 34/189 (18%)
TGFB 354..455 CDD:214556 40/101 (40%)
NODALNP_060525.3 TGFb_propeptide 29..166 CDD:279078 31/144 (22%)
TGFB 247..346 CDD:214556 38/99 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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