DRSC/TRiP Functional Genomics Resources

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Protein Alignment gbb and mstna

DIOPT Version :9

Sequence 1:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_001004122.1 Gene:mstna / 445816 ZFINID:ZDB-GENE-050208-735 Length:366 Species:Danio rerio


Alignment Length:439 Identity:102/439 - (23%)
Similarity:161/439 - (36%) Gaps:138/439 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 DNGKDQTIMHRVLSEDDKL-DVSYEILEFLGIAERPT-HLSSHQLSLRKSAP-KFLLDVYHRITA 105
            |||:..|...|..|:..:| .:..:||..|.:.:.|. ...:.:|.|.|:.| :.|||.|     
Zfish    37 DNGQCTTCQFRQQSKLLRLHSIKSQILSILRLEQAPNISRDTVKLLLPKAPPLQELLDQY----- 96

  Fly   106 EEGLSDQDEDDDYERGHRSRRSADLEEDEGEQQKNFITDL--DKRAIDE---------------- 152
                 ||              :..:.|||.:.....|..:  :.:||.:                
Zfish    97 -----DQ--------------NGGISEDEEQASSETIITMATEPQAITQLVGMPKCCMFALSPKI 142

  Fly   153 -SDIIMTFLNKRHHNVDELRHEHGRRLWFDV--SNVPNDNYLVMAELRIYQNANEGKWLTANREF 214
             .|.|:..|                 ||..:  :..|...|:.::.|   ::::||         
Zfish   143 LPDSILKAL-----------------LWIYLRPAEEPTTVYIQISHL---ESSSEG--------- 178

  Fly   215 TITVYAIGTGTLGQHTMEPLSSVNTTGDYVGWLELNVTEGLHEWLVKSKDNHGIYIGAHAVNRPD 279
                        ..|:......::.......|..:::.:.|..||.:.:.|.||.|.|...|..|
Zfish   179 ------------NNHSRIRAQKIDVNARTNSWQHIDMKQLLKLWLKQPQSNFGIEIKAFDANGND 231

  Fly   280 REVKLDDIGLIHRKVDDEFQPFMIGFFRGPELIKATAHSSHHRSKRSASHPRKRKKSVSPNNVPL 344
            ..|...:.|      ::..|||          ::.....:..||:|...                
Zfish   232 LAVTSTESG------EEGLQPF----------LEVKISDTGKRSRRDTG---------------- 264

  Fly   345 LEPME-STRS-CQMQTLYIDFKDLGWHDWIIAPEGYGAFYCSGEC--NFPLNAHMNATNHAIVQT 405
            |:..| ||.| |....|.:||:|.|| ||||||:.|.|.||||||  .:|   |.:..|.|    
Zfish   265 LDCDEHSTESRCCRYPLTVDFEDFGW-DWIIAPKRYKANYCSGECVQKYP---HSHIVNKA---- 321

  Fly   406 LVHLLEPKKVPKPCCAPTRLGALPVLYHLNDENVNLKKYRNMIVKSCGC 454
                 .|:....|||.||::..:.:||..:.|.:...|..:|:|..|||
Zfish   322 -----NPRGSAGPCCTPTKMSPINMLYFNDREQIIYGKIPSMVVDLCGC 365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 54/284 (19%)
TGFB 354..455 CDD:214556 40/103 (39%)
mstnaNP_001004122.1 TGFb_propeptide 37..248 CDD:279078 54/291 (19%)
TGF_beta 275..365 CDD:278448 38/102 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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