DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gbb and mav

DIOPT Version :9

Sequence 1:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_524626.1 Gene:mav / 43804 FlyBaseID:FBgn0039914 Length:701 Species:Drosophila melanogaster


Alignment Length:530 Identity:121/530 - (22%)
Similarity:201/530 - (37%) Gaps:143/530 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 LMFVATTPPAVEATQSGIYIDNGKDQTIMHRVLSEDDKLDVSYEILEFLGIAERP----THLSSH 84
            :.::.|.|  :::.|:....|.|.:.....:.....|:..:.:.:|:.|||.:.|    .::|..
  Fly   215 VQWINTVP--IQSRQTRETRDIGLETKRHSKPSKRVDETRLKHLVLKGLGIKKLPDMRKVNISQA 277

  Fly    85 QLS---------LRKSAPK------------FLLDVYHRITAEEGLSDQDEDDDYERGHRSRRSA 128
            :.|         ||.:..|            |..|::.......|.:  |..:...|..||.:..
  Fly   278 EYSSKYIEYLSRLRSNQEKGNSYFNNFMGASFTRDLHFLSITTNGFN--DISNKRLRHRRSLKKI 340

  Fly   129 DLEEDEGEQQKNFITDLDKRAIDESDIIMTF-------LNKRHHNVDE----------------L 170
            :......::.:|: .||.:...|..:|::.|       .|..|..:||                .
  Fly   341 NRLNQNPKKHQNY-GDLLRGEQDTMNILLHFPLTNAQDANFHHDKIDEANVRLMLLYSSSLATNF 404

  Fly   171 RHEHGRRL-----------------WFDVS-NVPNDNYLVMAELRIYQNANEGKWLTANREFTIT 217
            |...|.|.                 :.||: |..|.|......|::||      .|:|||...||
  Fly   405 RRGPGSRKNKISQISGNDNIERHCNFGDVNLNQSNKNSSQQLTLKVYQ------LLSANRRRKIT 463

  Fly   218 VYAIGTGTLG-QHTMEPLSSVNTTGDYVGWLELNVTEGLHEWLVKSKDNHGI--------YIGAH 273
            ...|..|.:| |.|.            ..|:|.:||:.:..||.||.:|.||        .|||.
  Fly   464 SRKIEFGNVGFQETR------------TQWIEFDVTKAVRSWLNKSHENLGIEIQCDKCKSIGAR 516

  Fly   274 AV-----NRPDREVKLDD--------IGLI-------HRKVDDEFQPFMIGFFRGPELIKATAHS 318
            .:     :.|.|.....|        :.:|       .:..|.:....|:...|..:.:      
  Fly   517 ILSDFSPSTPPRSTASSDEHLNLMPVLNIIGHGTLNSQQHGDADIHQIMLTNNRSDQYV------ 575

  Fly   319 SHHRSKRSASHPRKRKKSVSPNNVPLLEPMESTRSCQMQTLYIDFKDLGWHDWIIAPEGYGAFYC 383
             ||||    :|....:|....||...|.    .|.|:.| |.:.||.:...::|:.|:.:.|.||
  Fly   576 -HHRS----NHDSTWRKDKWTNNCYKLH----QRCCRNQ-LDVAFKSIKGFEFILQPKVFDAGYC 630

  Fly   384 SGECNFPLNAHMNATNHAIVQTLVHLLEPKKVPKPCCAPTRLGALPVLYHLNDEN----VNLKKY 444
            .|.|.   ..|..|.:||::|:|:...:.|:.|:|||.|::|..|.:| |: |||    :.:..:
  Fly   631 HGRCP---PRHNPAHHHALLQSLIWQEDHKRAPRPCCTPSKLEMLEIL-HV-DENHSDKLKISTW 690

  Fly   445 RNMIVKSCGC 454
            .:|.|..|.|
  Fly   691 SDMQVVECAC 700

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 72/355 (20%)
TGFB 354..455 CDD:214556 35/105 (33%)
mavNP_524626.1 TGFb_propeptide <442..506 CDD:279078 25/81 (31%)
TGF_beta 599..700 CDD:278448 35/106 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466520
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11848
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

Return to query results.
Submit another query.