DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gbb and tgfb3

DIOPT Version :9

Sequence 1:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_919367.2 Gene:tgfb3 / 369195 ZFINID:ZDB-GENE-030723-4 Length:410 Species:Danio rerio


Alignment Length:486 Identity:113/486 - (23%)
Similarity:186/486 - (38%) Gaps:127/486 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 LGLGMVLLMFVATTPPAVE-ATQSGIYIDNGKDQTIMHRVLSEDDKLDVSYEILEFLGIAERPTH 80
            ||.|::.::.:.:...::. :|.:.:.|||.|.:.:.          .:..:||..|.:...|..
Zfish     3 LGKGLLFVLLLNSVTMSLSLSTCTTVDIDNIKKKRVE----------AIRGQILSKLRLTSPPQT 57

  Fly    81 LSSHQ-----LSLRKSAPKFLLDVYHRITAEEGLSDQDEDDDYERG-HRSRRSADLEEDEGEQQK 139
            |...|     |:|..|. :.|||.:.:...:....|..|.:.|.:. |:      ....:|..:.
Zfish    58 LGPSQVPYQVLALYNST-RDLLDGFGKDRHQSCGQDNTETEYYAKEIHK------FNMIQGSPEN 115

  Fly   140 NFITDLDKRAIDESDIIMTFLNKRHHNVDELRHEHGRRLWFDVSNV-PNDNYLVMAELRIYQNAN 203
            |.:....|...                        .:...||||.: .|.:.|..||.|..:..|
Zfish   116 NDLPYCPKGIT------------------------SKVFRFDVSIMEKNASNLFRAEFRALRMPN 156

  Fly   204 EGKWLTANREFTITVYAIGTGTLGQHTMEPLSSVNTTGDYVG-----------WLELNVTEGLHE 257
            ..   |:..|..|.:|.|         :.|...:... .|:|           |:..:|||.:.|
Zfish   157 LS---TSRTEQRIELYQI---------LRPDEHIGKQ-RYIGRKNVMIGGTDEWVSFDVTETVRE 208

  Fly   258 WLVKSKDNHGIYIGAHA---VNRPDREV---------------KLDDIGLIH------RKVDDEF 298
            ||.....|.|:.|..|.   ..||:.|:               .::|.|.|.      :|..::.
Zfish   209 WLTNRATNLGLEISVHCPCHTFRPNGEIIENVNEALEVKFRGMDVEDDGPIRSDMGRLKKPKEQN 273

  Fly   299 QPFMIGFFRGPELIKATAHSSHHRSKRSASHPRKRKKSVSP----NNVPLLEPMESTRSCQMQTL 359
            .|.:|.....|..:.....|            |:||:::..    :|.        ..:|.::.|
Zfish   274 LPHLILMMLPPHRLDVLPTS------------RRRKRALDTKYCFSNY--------EENCCVRKL 318

  Fly   360 YIDFK-DLGWHDWIIAPEGYGAFYCSGECNFPLNAHMNATNHAIVQTLVHLLEPKKVPKPCCAPT 423
            ||||: ||||. ||..|:||.|.:|||.|.:..:|.   |.|:.:.:|.:.|.|:....|||.|.
Zfish   319 YIDFRQDLGWR-WIHEPKGYHANFCSGPCPYLRSAD---TTHSSLLSLYNTLNPEASASPCCVPQ 379

  Fly   424 RLGALPVLYHLNDENVNLKKYRNMIVKSCGC 454
            .|..|.:||::. ....:::..|||||||.|
Zfish   380 DLEPLTILYYVG-RTPKVEQLSNMIVKSCKC 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 60/302 (20%)
TGFB 354..455 CDD:214556 42/102 (41%)
tgfb3NP_919367.2 TGFb_propeptide 22..228 CDD:279078 53/259 (20%)
TGF_beta 311..409 CDD:278448 41/102 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.