DRSC/TRiP Functional Genomics Resources

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Protein Alignment gbb and tgfb2

DIOPT Version :9

Sequence 1:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_919366.1 Gene:tgfb2 / 369194 ZFINID:ZDB-GENE-030723-3 Length:411 Species:Danio rerio


Alignment Length:476 Identity:118/476 - (24%)
Similarity:196/476 - (41%) Gaps:111/476 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 LGMVLLMFVATTPPAVEATQSGIYIDNGKD---QTIMHRVLSEDDKLDVSYEILEFLGIAERPTH 80
            |.::||:.:|....:: :|.|.:.:|..|.   :.|..::||: .||....||.      ..|..
Zfish     6 LSLLLLLDLAAVAVSL-STCSTVDMDQFKKKRIEAIRGQILSK-LKLSSPPEIY------PEPEE 62

  Fly    81 LSSHQLSLRKSAPKFLLDVYHRITAEEGLSDQDEDDDYERGHRSRRSADLEEDEGEQQKNFITDL 145
            :|...:::..|....|                     .|:.:....:.:.:..|.|.....:..:
Zfish    63 VSRGIIAIYNSTRDLL---------------------QEKANERAATCERQRSEEEYYAKEVHKI 106

  Fly   146 DKRAIDESDIIMTFLNKRHHNVDELRHEHGRRLWFDVSNV-PNDNYLVMAELRIYQNANEGKWLT 209
            |.:....|:.::.   .:|:      :.:.|||.||||:: .|.:.||.|:|||::..|....:.
Zfish   107 DMQPFYPSENVIL---SQHY------YPYFRRLMFDVSSMEKNASNLVKAQLRIFRLQNPKARVF 162

  Fly   210 ANREFTITVY-AIGTGTLGQHTMEPLSS----VNTTGDYVGWLELNVTEGLHEWLVKSKDNHGIY 269
            ..|   |.:| .:|...|...|...::|    ..|.|:   ||..:|||.:.|||:....|.|..
Zfish   163 EQR---IELYQVLGHKDLTSPTQRYINSKVVRTRTEGE---WLSFDVTEAVSEWLLHRDRNKGFK 221

  Fly   270 IGAHA------------VNRPDREVKLDDIGLIHRKVDDEFQPFMIGFFRGPEL--IKATAHS-- 318
            |..|.            :.....|::....|     :||       .|..|.:|  .|...||  
Zfish   222 ISLHCPCCTFVPSNNYIIPNKSEELETRFAG-----IDD-------SFVNGGDLKMFKKRRHSGQ 274

  Fly   319 ----------SHHRSKRSASHPRKRKKSVSPNNVPLLEPMESTRSCQ----MQTLYIDF-KDLGW 368
                      |:....:..||.:||          .|:....:|:.|    :::||||| |||||
Zfish   275 SPHLLLMLLPSYRLESQHKSHRQKR----------ALDTAFCSRNVQDNRCLRSLYIDFKKDLGW 329

  Fly   369 HDWIIAPEGYGAFYCSGECNFPLNAHMNATNHAIVQTLVHLLEPKKVPKPCCAPTRLGALPVLYH 433
            . ||..|:||.|.:|:|.|.:..:|.   |.|:.:..|.:.:.|:....|||....|..|.:||:
Zfish   330 R-WIHEPKGYNANFCAGACPYLWSAD---TQHSNILGLYNTINPEASASPCCVSQDLEPLTILYY 390

  Fly   434 LNDENVNLKKYRNMIVKSCGC 454
            :. :...:::..|||||||.|
Zfish   391 IG-KTPKIEQLSNMIVKSCKC 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 59/281 (21%)
TGFB 354..455 CDD:214556 40/106 (38%)
tgfb2NP_919366.1 TGFb_propeptide 21..228 CDD:366248 57/250 (23%)
TGF_beta_TGFB2 314..410 CDD:381655 38/100 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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