DRSC/TRiP Functional Genomics Resources

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Protein Alignment gbb and tgfb1a

DIOPT Version :9

Sequence 1:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_878293.1 Gene:tgfb1a / 359834 ZFINID:ZDB-GENE-030618-1 Length:377 Species:Danio rerio


Alignment Length:417 Identity:102/417 - (24%)
Similarity:170/417 - (40%) Gaps:111/417 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 EILEFLGIAERPTHLSSHQLSLRKSAPKFLLDVYHRITAEEGLSD---------QDEDDDYERGH 122
            :||..|.:|:.|...:...   .:..|..||.:|:. |.|  ||:         ||||:||    
Zfish    42 QILSKLRMAKEPESGADDD---GQKIPDSLLSLYNS-TVE--LSEEMKTKIVPVQDEDEDY---- 96

  Fly   123 RSRRSADLEEDEGEQQKNFITDLDKRAIDESDIIMTFLNKRHH---NVDELRHEHGRRLWFDVSN 184
                       .|::...|:....:.            |.:|.   ||.|::.           :
Zfish    97 -----------FGKEVHKFVFQQAQN------------NTKHQMFFNVSEMKR-----------S 127

  Fly   185 VPNDNYLVMAELRI-YQNANEGKWLTANREFTITVYAIGTGTLGQHTMEPLSSVNTTGDYVGWLE 248
            :|:...|..||||: .:|.      |.::|..:.:|. |.|...::......|.:.:.   .||.
Zfish   128 IPDYRLLSQAELRLRIKNP------TMDQEQRLELYR-GVGDQARYLGTRFVSKDLSN---RWLS 182

  Fly   249 LNVTEGLHEWLVKSKDNHGIYIGAH---------------AVNRPDREVKLDDIGLIHRKVDDEF 298
            .:|.:.:.|||..|:|...:.:..:               .::..|:: :.|..||    .|...
Zfish   183 FDVKQTMIEWLQGSEDEETLELRLYCDCKANQQSTDKFLFTISGLDKQ-RGDTAGL----ADMMV 242

  Fly   299 QPFMIGFFRGPELIKATAHSSHHRSKRSASHPRKRKKSVSPNNVPLLEPMESTRSCQMQTLYIDF 363
            :|:::          |.:..|:..|..|.   |||:...:.....     |.|.:|.|:.|||||
Zfish   243 KPYIL----------A
LSLPSNGNSLASV---RKRRAVGTDETCD-----EKTETCCMRKLYIDF 289

  Fly   364 -KDLGWHDWIIAPEGYGAFYCSGECNFPLNAHMNATNHAIVQTLVHLLEPKKVPKPCCAPTRLGA 427
             ||||| .||..|:||.|.||.|.|.:..||.   ..::.:..|.....|....:|||.|..|..
Zfish   290 RKDLGW-KWIHKPKGYFANYCMGSCTYIWNAE---NKYSQILALYKHHNPGASAQPCCVPAILDP 350

  Fly   428 LPVLYHLNDENVNLKKYRNMIVKSCGC 454
            ||:||::..:: .:::..||:|::|.|
Zfish   351 LPILYYVGRQH-KVEQLSNMVVRNCKC 376

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 53/265 (20%)
TGFB 354..455 CDD:214556 40/102 (39%)
tgfb1aNP_878293.1 TGFb_propeptide 20..248 CDD:366248 53/274 (19%)
TGF_beta_TGFB1 280..377 CDD:381654 40/102 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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