DRSC/TRiP Functional Genomics Resources

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Protein Alignment gbb and Lefty2

DIOPT Version :9

Sequence 1:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_796073.1 Gene:Lefty2 / 320202 MGIID:2443573 Length:368 Species:Mus musculus


Alignment Length:388 Identity:79/388 - (20%)
Similarity:129/388 - (33%) Gaps:137/388 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 SADLEE--DEGEQQKNFITDLDKRAIDESDIIMTFLNKRHHNVDELRHEHGRRLWFDVS------ 183
            |||:||  .....:..::..|.....|.|      ..||..  ...|...||.|..:.|      
Mouse    45 SADVEEMAIPTHVRSQYVALLQGSHADRS------RGKRFS--QNFREVAGRFLMSETSTHLLVF 101

  Fly   184 ----NVPNDNYLVMAELRIYQNANEGKWLTANREF----------TITVYAIGTGTLGQHTMEPL 234
                .:|.::.||.|.||::|   |....||.|.|          .:|:..:.....|.:....:
Mouse   102 GMEQRLPPNSELVQAVLRLFQ---EPVPRTALRRFERLSPHSARARVTIEWLRVREDGSNRTALI 163

  Fly   235 SSVNTTGDYVGWLELNVTEGLHEWLVKSKDNHGIYIGAHAVNRPDREVKLDDIGLIHRKVDDEFQ 299
            .|...:....||...:|||.::.|              ..::||                     
Mouse   164 DSRLVSIHESGWKAFDVTEAVNFW--------------QQLSRP--------------------- 193

  Fly   300 PFMIGFFRGPELIKATAHSSH--------HRSKRSAS----------------HPRKRKKSVSPN 340
                   |.|.|::.:....|        |:..|.|:                |....|...:..
Mouse   194 -------RQPLLLQVSVQREHLGPGTWSAHKLVRFAAQGTPDGKGQGEPQLELHTLDLKDYGAQG 251

  Fly   341 NV-PLLEPMESTRSCQMQTLYIDFKDLGW-HDWIIAPEGYGAFYCSGECNFPLNAHMNATNHAIV 403
            |. |.:...|.||.|: |.:|:|.:.:.| .:||:.|.|:..:.|.|.|                
Mouse   252 NCDPEVPVTEGTRCCR-QEMYLDLQGMKWAENWILEPPGFLTYECVGSC---------------- 299

  Fly   404 QTLVHLLE------PKKVPKPCCAPTRLGALPVLYHLND------ENVNLKKYRNMIVKSCGC 454
               :.|.|      |...|:.|.| :.:.:||::..:.:      :.|:|.   ||.|::|.|
Mouse   300 ---LQLPESLTIGWPFLGPRQCVA-SEMTSLPMIVSVKEGGRTRPQVVSLP---NMRVQTCSC 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 38/199 (19%)
TGFB 354..455 CDD:214556 27/114 (24%)
Lefty2NP_796073.1 TGFb_propeptide <106..211 CDD:279078 27/149 (18%)
TGF_beta 263..355 CDD:278448 28/115 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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