DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gbb and bmp2b

DIOPT Version :9

Sequence 1:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_571435.1 Gene:bmp2b / 30632 ZFINID:ZDB-GENE-980526-474 Length:411 Species:Danio rerio


Alignment Length:474 Identity:130/474 - (27%)
Similarity:213/474 - (44%) Gaps:98/474 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 VAVLASLGLGMVLLMFVATTPPAVEATQSGIYIDNGKDQTIMHRVLSEDDKLDVSY------EIL 69
            |..|..|.||.|||.......|.::..:   |.|:|:         ...::.|.::      .:|
Zfish     5 VRALTVLLLGQVLLGGAVGLIPEIDRRK---YSDSGR---------HTPERTDTNFLNEFELRLL 57

  Fly    70 EFLGIAERPTHLSSHQLSLRKSA--PKFLLDVYHRITAEEGLSDQDEDDDYERGHRSRRSADLEE 132
            ...|:..:||.        .|||  |:::||:|:        ...:.||...|..||.....:| 
Zfish    58 NMFGLKRKPTP--------SKSAVVPQYMLDLYY--------MHSENDDPNIRRPRSTMGKHVE- 105

  Fly   133 DEGEQQKNFITDLDKRAIDESDIIMTFLNKRHHN-----VDELRHEHGRRLWFDVSNVPNDNYLV 192
                           ||...::.|.:|    ||.     :..|:.:..::.:|:::::|.:..:.
Zfish   106 ---------------RAASRANTIRSF----HHEEAFEALSSLKGKTTQQFFFNLTSIPGEELIS 151

  Fly   193 MAELRIYQNANEGKWLTANREFTITVYAIGTGTLGQHTMEPLSSVNTT----GDYVGWLELNVTE 253
            .|||||:::...|...|:... .|.:|.:....|.. :.|||:.:..|    ..:..|...:|..
Zfish   152 AAELRIFRDQVLGDASTSGFH-RINIYEVFRPALAP-SKEPLTRLLDTRLVQDSHTRWESFDVGS 214

  Fly   254 GLHEWLVKSKDNHGIY----------IGAHAVNRPDREVKLDDIGLIHRKVDD--EFQPFMIGFF 306
            .:..|..:|:.|||:.          :...|.:...:.|::.  ..:|...|.  :.:|.::.:.
Zfish   215 AVARWARESQHNHGLLVEVLHPKESEVSEEAESNRRKHVRVS--RSLHADEDSWAQARPLLVTYS 277

  Fly   307 RGPELIKATAHSSHHRSKRSASHPRK-RKKSVSPNNVPLLEPMESTRSCQMQTLYIDFKDLGWHD 370
            ...:   .||....:|.||.|...:| |:|....:|            |:...||:||.|:||::
Zfish   278 HDGQ---GTAVLHSNREKRQARRGQKPRRKHHQRSN------------CRRHALYVDFSDVGWNE 327

  Fly   371 WIIAPEGYGAFYCSGECNFPLNAHMNATNHAIVQTLVHLLEPKKVPKPCCAPTRLGALPVLYHLN 435
            ||:||.||.||||.|||.|||..|:|:||||||||||:.:. ..:||.||.||.|..:.:||...
Zfish   328 WIVAPPGYHAFYCHGECPFPLPDHLNSTNHAIVQTLVNSVN-SNIPKACCIPTELSPISLLYLDE 391

  Fly   436 DENVNLKKYRNMIVKSCGC 454
            .|.|.||.|::|:|:.|||
Zfish   392 YEKVILKNYQDMVVEGCGC 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 55/289 (19%)
TGFB 354..455 CDD:214556 55/101 (54%)
bmp2bNP_571435.1 TGFb_propeptide 49..276 CDD:366248 52/266 (20%)
TGF_beta_BMP2_like 311..411 CDD:381638 55/101 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X157
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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