DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gbb and GDF2

DIOPT Version :9

Sequence 1:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_057288.1 Gene:GDF2 / 2658 HGNCID:4217 Length:429 Species:Homo sapiens


Alignment Length:467 Identity:114/467 - (24%)
Similarity:176/467 - (37%) Gaps:148/467 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 DQTIMHRVLSEDDKLDVSYEILEFLGIAERPTHLSSHQLSLRKSAPKFLLDVYHRITAEEGLSDQ 112
            :.|...::..|:.|:|    .|..|.::..|:     |...|...|::::|:|:|.|:       
Human    50 EHTFNLKMFLENVKVD----FLRSLNLSGVPS-----QDKTRVEPPQYMIDLYNRYTS------- 98

  Fly   113 DEDDDYERGHRSRRSADLEEDEGEQQKNFITDLDKRAIDESDIIMTFLNKRHHNV----DELRHE 173
                                             ||.....|:|:.:|..:...::    |....:
Human    99 ---------------------------------DKSTTPASNIVRSFSMEDAISITATEDFPFQK 130

  Fly   174 HGRRLWFDVSNVPNDNYLVMAELRIYQNANEGKWLTANREFTITVYAIGTGTLGQHTMEPLSSVN 238
            |  .|.|::| :|....:..||||:|.:.......:.:.:.::.:|.:..||      :...|..
Human   131 H--ILLFNIS-IPRHEQITRAELRLYVSCQNHVDPSHDLKGSVVIYDVLDGT------DAWDSAT 186

  Fly   239 TTGDYV--------GWLELNVTEGLHEWL----VKSKDNHGIYIGAHAVNRPDREVKLDDIGLIH 291
            .|..::        ||..|.|:..:..|:    .|||:.              .||.::.    |
Human   187 ETKTFLVSQDIQDEGWETLEVSSAVKRWVRSDSTKSKNK--------------LEVTVES----H 233

  Fly   292 RKVDDEFQ----------PFMIGFFRGP---------ELIKATAH-------------------S 318
            ||..|...          ||.:.|....         ||.:..:|                   |
Human   234 RKGCDTLDISVPPGSRNLPFFVVFSNDHSSGTKETRLELREMISHEQESVLKKLSKDGSTEAGES 298

  Fly   319 SHHRSK----RSASHPRKRKKSVSPNNVPLLEPMESTRSCQMQTLYIDFKDLGWHDWIIAPEGYG 379
            ||....    .:.|...:||:|....:           .||..:|.::|:|:||..|||||:.|.
Human   299 SHEEDTDGHVAAGSTLARRKRSAGAGS-----------HCQKTSLRVNFEDIGWDSWIIAPKEYE 352

  Fly   380 AFYCSGECNFPLNAHMNATNHAIVQTLVHLLEPKKVPKPCCAPTRLGALPVLYHLNDENVNLKK- 443
            |:.|.|.|.|||...:..|.||||||||||..|.||.|.||.||:|..:.|||. :|..|...| 
Human   353 AYECKGGCFFPLADDVTPTKHAIVQTLVHLKFPTKVGKACCVPTKLSPISVLYK-DDMGVPTLKY 416

  Fly   444 -YRNMIVKSCGC 454
             |..|.|..|||
Human   417 HYEGMSVAECGC 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 51/282 (18%)
TGFB 354..455 CDD:214556 52/103 (50%)
GDF2NP_057288.1 TGFb_propeptide 76..257 CDD:279078 45/252 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 283..308 3/24 (13%)
TGF_beta 326..428 CDD:278448 50/102 (49%)
Interaction with ENG. /evidence=ECO:0000269|PubMed:28564608 402..416 5/14 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.