DRSC/TRiP Functional Genomics Resources

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Protein Alignment gbb and Bmp4

DIOPT Version :9

Sequence 1:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_036959.2 Gene:Bmp4 / 25296 RGDID:2213 Length:408 Species:Rattus norvegicus


Alignment Length:436 Identity:116/436 - (26%)
Similarity:186/436 - (42%) Gaps:128/436 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 DVSYEILEFLGIAERPTHLSSHQLSLRKSAPKFLLDVYHRITAEEGLSDQDEDDDYERGHRSRRS 127
            |....:|:..|:..||      |.|.....|.::.|:|                         |.
  Rat    56 DFEATLLQMFGLRRRP------QPSKSAVIPDYMRDLY-------------------------RL 89

  Fly   128 ADLEEDEGEQQKNFITDLDKRAIDESDIIMTFLNKRH-HNVDELRHEHGRRLWFDVSNVPNDNYL 191
            ...||:|.||.:....:..:|....::.:.:|.::.| .|:.........|.:|::|::|.:..:
  Rat    90 QSGEEEEEEQSQGTGLEYPERPASRANTVRSFHHEEHLENIPGTSESSAFRFFFNLSSIPENEVI 154

  Fly   192 VMAELRIY-QNANEG-KWLTANREF-TITVYAIGTGTLGQHTMEPLSSV---------------- 237
            ..||||:: :..::| .|   .:.| .|.:|.:         |:|.:.:                
  Rat   155 SSAELRLFREQVDQGPDW---EQGFHRINIYEV---------MKPPAEMVPGHLITRLLDTRLVH 207

  Fly   238 -NTTGDYVGWLELNVTEGLHEWLVKSKDNHGIYI------------GAHAVNRPDREVKLDDIGL 289
             |.|    .|...:|:..:..|..:.:.|:|:.|            |.|.              .
  Rat   208 HNVT----RWETFDVSPAVLRWTREKQPNYGLAIEVTHLHQTRTHQGQHV--------------R 254

  Fly   290 IHRKVDD------EFQPFMIGF---FRGPELIKATAHSSHHRSKRSASH--PRKRKKSVSPNNVP 343
            |.|.:..      :.:|.::.|   .||..|       :..|:|||..|  .|.|||:       
  Rat   255 ISRSLPQGSGNWAQLRPLLVTFGHDGRGHTL-------TRRRAKRSPKHHPQRSRKKN------- 305

  Fly   344 LLEPMESTRSCQMQTLYIDFKDLGWHDWIIAPEGYGAFYCSGECNFPLNAHMNATNHAIVQTLVH 408
                    ::|:..:||:||.|:||:|||:||.||.||||.|:|.|||..|:|:||||||||||:
  Rat   306 --------KNCRRHSLYVDFSDVGWNDWIVAPPGYQAFYCHGDCPFPLADHLNSTNHAIVQTLVN 362

  Fly   409 LLEPKKVPKPCCAPTRLGALPVLYHLNDENVNLKKYRNMIVKSCGC 454
            .:. ..:||.||.||.|.|:.:||....:.|.||.|:.|:|:.|||
  Rat   363 SVN-SSIPKACCVPTELSAISMLYLDEYDKVVLKNYQEMVVEGCGC 407

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 48/280 (17%)
TGFB 354..455 CDD:214556 55/101 (54%)
Bmp4NP_036959.2 TGFb_propeptide 41..276 CDD:395559 48/280 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 91..113 6/21 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 281..307 12/47 (26%)
TGF_beta_BMP4_BMP2B 302..408 CDD:381661 58/122 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X157
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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