DRSC/TRiP Functional Genomics Resources

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Protein Alignment gbb and Gdf5

DIOPT Version :9

Sequence 1:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster
Sequence 2:XP_003749648.1 Gene:Gdf5 / 252835 RGDID:620102 Length:495 Species:Rattus norvegicus


Alignment Length:405 Identity:110/405 - (27%)
Similarity:174/405 - (42%) Gaps:94/405 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 RPTHLSSHQLSLRKSAPKFLLDVYHRITAEEGLSDQDEDDDYERGHRSRRSADLEEDEGEQQKNF 141
            ||..::.|:         ::|.:|..      |||.|     .:|..|  |..||........:|
  Rat   157 RPPPITPHE---------YMLSLYRT------LSDAD-----RKGGNS--SVKLEAGLANTITSF 199

  Fly   142 ITDLDKRAIDESDIIMTFLNKRHHNVDELRHEHGRRLWFDVSNVPNDNYLVMAELRIYQNANEGK 206
            |   ||...|...::                 ..:|..||:|.:..|. |:.|||||.       
  Rat   200 I---DKGQDDRGPVV-----------------RKQRYVFDISALEKDG-LLGAELRIL------- 236

  Fly   207 WLTANREFTITVYAIGTGTLGQHTMEPLSSVNTTGDYVGWLELNVTEGL--HEWLV--------K 261
                 |:..:.|......:.|:.....|||..:.......|::....||  ..|.|        .
  Rat   237 -----RKKPLDVAKPAVPSSGRVAQLKLSSCPSGRQPAALLDVRSVPGLDGSGWEVFDIWKLFRN 296

  Fly   262 SKDNHGIYIGAHAVNRPDREVKLDDIGL--IHRKVDDEFQPFMIGFFRGPEL----IKATAHS-- 318
            .|::..:.:...|..| .|.|.|..:|.  ..|:|.::....:.|..:..:|    |||.:..  
  Rat   297 FKNSAQLCLELEAWER-GRAVDLRGLGFERAARQVHEKALFLVFGRTKKRDLFFNEIKARSGQDD 360

  Fly   319 --------SHHRSKRSASHPRKRKKSVSPNNVPLLEPMESTRS-CQMQTLYIDFKDLGWHDWIIA 374
                    |..|.:|:....|:.|:           |.::.:: |..:.|:::|||:||.|||||
  Rat   361 KTVYEYLFSQRRKRRAPLANRQGKR-----------PSKNLKARCSRKALHVNFKDMGWDDWIIA 414

  Fly   375 PEGYGAFYCSGECNFPLNAHMNATNHAIVQTLVHLLEPKKVPKPCCAPTRLGALPVLYHLNDENV 439
            |..|.||:|.|.|.|||.:|:..||||::|||::.::|:..|..||.||||..:.:|:..:..||
  Rat   415 PLEYEAFHCEGLCEFPLRSHLEPTNHAVIQTLMNSMDPESTPPTCCVPTRLSPISILFIDSANNV 479

  Fly   440 NLKKYRNMIVKSCGC 454
            ..|:|.:|:|:||||
  Rat   480 VYKQYEDMVVESCGC 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 50/239 (21%)
TGFB 354..455 CDD:214556 49/101 (49%)
Gdf5XP_003749648.1 TGFb_propeptide 147..338 CDD:413528 50/236 (21%)
TGF_beta_GDF5 393..495 CDD:381669 49/102 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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