DRSC/TRiP Functional Genomics Resources

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Protein Alignment gbb and Tgfb1

DIOPT Version :9

Sequence 1:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_035707.1 Gene:Tgfb1 / 21803 MGIID:98725 Length:390 Species:Mus musculus


Alignment Length:371 Identity:90/371 - (24%)
Similarity:146/371 - (39%) Gaps:105/371 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 RSRRSADLEEDEGEQQKNFITDLDKRAIDESDIIMTFLNKRHHNVDELRHE--HGRRLWFDVSN- 184
            |.|.:.:..:.|.|.:.::..         .::....:..|::.:.|...:  |...::|:.|: 
Mouse    85 RDRVAGESADPEPEPEADYYA---------KEVTRVLMVDRNNAIYEKTKDISHSIYMFFNTSDI 140

  Fly   185 ---VPNDNYLVMAELR-------------IYQNANEGKWLTANREFTITVYAIGTGTLGQHTMEP 233
               ||....|..||||             :||..:...|                ..||...:.|
Mouse   141 REAVPEPPLLSRAELRLQRLKSSVEQHVELYQKYSNNSW----------------RYLGNRLLTP 189

  Fly   234 LSSVNTTGDYVGWLELNVTEGLHEWLVKSKDNHGIYIGAH-AVNRPDREVKLD----------DI 287
            .       |...||..:||..:.:||.:.....|....|| :.:..|.::.::          |:
Mouse   190 T-------DTPEWLSFDVTGVVRQWLNQGDGIQGFRFSAHCSCDSKDNKLHVEINGISPKRRGDL 247

  Fly   288 GLIHRKVDDEFQPFMIGFFRGPELIKAT-------AHSSHHRSKRSASHPRKRKKSVSPNNVPLL 345
            |.||    |..:||:        |:.||       .|||.||            :::..|..   
Mouse   248 GTIH----DMNRPFL--------LLMATPLERAQHLHSSRHR------------RALDTNYC--- 285

  Fly   346 EPMEST-RSCQMQTLYIDF-KDLGWHDWIIAPEGYGAFYCSGECNFPLNAHMNATNHAIVQTLVH 408
              ..|| ::|.::.||||| ||||| .||..|:||.|.:|.|.|.:..:..   |.::.|..|.:
Mouse   286 --FSSTEKNCCVRQLYIDFRKDLGW-KWIHEPKGYHANFCLGPCPYIWSLD---TQYSKVLALYN 344

  Fly   409 LLEPKKVPKPCCAPTRLGALPVLYHLNDENVNLKKYRNMIVKSCGC 454
            ...|.....|||.|..|..||::|::. ....:::..||||:||.|
Mouse   345 QHNPGASASPCCVPQALEPLPIVYYVG-RKPKVEQLSNMIVRSCKC 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 40/211 (19%)
TGFB 354..455 CDD:214556 39/102 (38%)
Tgfb1NP_035707.1 TGFb_propeptide 30..261 CDD:366248 41/219 (19%)
Straightjacket domain. /evidence=ECO:0000250|UniProtKB:P07200 30..74
Arm domain. /evidence=ECO:0000250|UniProtKB:P07200 75..271 43/229 (19%)
Bowtie tail. /evidence=ECO:0000250|UniProtKB:P01137 226..252 5/29 (17%)
Cell attachment site. /evidence=ECO:0000255 244..246 0/1 (0%)
TGF_beta_TGFB1 292..390 CDD:381654 39/103 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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