DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gbb and Gdf11

DIOPT Version :9

Sequence 1:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_034402.1 Gene:Gdf11 / 14561 MGIID:1338027 Length:405 Species:Mus musculus


Alignment Length:482 Identity:108/482 - (22%)
Similarity:171/482 - (35%) Gaps:116/482 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 VAVLASLGLGMVLLMF------VATTPPAVEATQSGIYIDNGKDQT----------------IMH 53
            :.:.|.|.||.:||..      .|...||..|..:......|.:::                .:.
Mouse     1 MVLAAPLLLGFLLLALELRPRGEAAEGPAAAAAAAAAAAGVGGERSSRPAPSAPPEPDGCPVCVW 65

  Fly    54 RVLSEDDKLD-VSYEILEFLGIAERPTHLSSHQLSLRKSAPKF--LLDVYHRITAEEGLSDQD-- 113
            |..|.:.:|: :..:||..|.:.|.|.........|...||..  :||::.  ...:.|..:|  
Mouse    66 RQHSRELRLESIKSQILSKLRLKEAPNISREVVKQLLPKAPPLQQILDLHD--FQGDALQPEDFL 128

  Fly   114 EDDDYERGHRSRRSADLEEDEGEQQKNFITDLDKRAIDESDIIMTFLNKRHHN-----VDELRHE 173
            |:|:|.....:..|...|.|...|            .|.|.:...|    |.:     ...|:  
Mouse   129 EEDEYHATTETVISMAQETDPAVQ------------TDGSPLCCHF----HFSPKVMFTKVLK-- 175

  Fly   174 HGRRLWFDVSNVPNDNYLVMAELRIYQNANEGKWLTA------NREFTITVYAIGTGTLGQHTME 232
              .:||..:..||....:.:..||:.....||   ||      .|...|....|...:...|   
Mouse   176 --AQLWVYLRPVPRPATVYLQILRLKPLTGEG---TAGGGGGGRRHIRIRSLKIELHSRSGH--- 232

  Fly   233 PLSSVNTTGDYVGWLELNVTEGLHEWLVKSKDNHGIYIGAHAVNRPDREVKLDDIGLIHRKVDDE 297
                         |..::..:.||.|..:.:.|.||.|.|...:..|..|.....|.      :.
Mouse   233 -------------WQSIDFKQVLHSWFRQPQSNWGIEINAFDPSGTDLAVTSLGPGA------EG 278

  Fly   298 FQPFMIGFFRGPELIKATAHSSHHRSKRSASHPRKRKKSVSPNNVPLLEPMESTRSCQMQTLYID 362
            ..|||       ||             |...:.::.::::   .:...|....:|.|: ..|.:|
Mouse   279 LHPFM-------EL-------------RVLENTKRSRRNL---GLDCDEHSSESRCCR-YPLTVD 319

  Fly   363 FKDLGWHDWIIAPEGYGAFYCSGECNFPLNAHMNATNHAIVQTLVHLLEPKKVPKPCCAPTRLGA 427
            |:..|| ||||||:.|.|.||||:|.:........|:      ||....|:....|||.||::..
Mouse   320 FEAFGW-DWIIAPKRYKANYCSGQCEYMFMQKYPHTH------LVQQANPRGSAGPCCTPTKMSP 377

  Fly   428 LPVLYHLNDENVNLKKYRNMIVKSCGC 454
            :.:||..:.:.:...|...|:|..|||
Mouse   378 INMLYFNDKQQIIYGKIPGMVVDRCGC 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 57/292 (20%)
TGFB 354..455 CDD:214556 36/101 (36%)
Gdf11NP_034402.1 TGFb_propeptide 59..283 CDD:279078 54/270 (20%)
TGFB 311..405 CDD:214556 36/102 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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