DRSC/TRiP Functional Genomics Resources

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Protein Alignment gbb and Gdf2

DIOPT Version :9

Sequence 1:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_062379.3 Gene:Gdf2 / 12165 MGIID:1321394 Length:428 Species:Mus musculus


Alignment Length:513 Identity:121/513 - (23%)
Similarity:187/513 - (36%) Gaps:173/513 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 LGMVLLMFVATTPPAV--------EATQSGIYIDNGKDQTIMH-RVLSEDDKLDVSYEILEFLGI 74
            |.:.||:.|....|..        |...|.:.:....::.:.. ::..|:.|:|    .|..|.:
Mouse    11 LPLFLLVCVTQQKPLQNWEQASPGENAHSSLGLSGAGEEGVFDLQMFLENMKVD----FLRSLNL 71

  Fly    75 AERPTHLSSHQLSLRKSAPKFLLDVYHRITAEEGLSDQDEDDDYERGHRSRRSADLEEDEGEQQK 139
            :..|:     |...|...|::::|:|:|.|.                                  
Mouse    72 SGIPS-----QDKTRAEPPQYMIDLYNRYTT---------------------------------- 97

  Fly   140 NFITDLDKRAIDESDIIMTFLNKRHHNVDEL------------RHEHGRRLWFDVSNVPNDNYLV 192
                  ||.:...|:|:.:|      :|::.            :|    .|.|::| :|....:.
Mouse    98 ------DKSSTPASNIVRSF------SVEDAISTAATEDFPFQKH----ILIFNIS-IPRHEQIT 145

  Fly   193 MAELRIYQNANEGKWLTANREFTITVY-----------AIGTGTLGQHTMEPLSSVNTTGDYVGW 246
            .||||:|.:.......|...|.::.||           |.||.|.       |.|.:...:  ||
Mouse   146 RAELRLYVSCQNDVDSTHGLEGSMVVYDVLEDSETWDQATGTKTF-------LVSQDIRDE--GW 201

  Fly   247 LELNVTEGLHEWLVKSKDNHGIYIGAHAVNRPDREVKLDDIGLIHRKVDDEFQ----------PF 301
            ..|.|:..:..|:....          ..|:...||.:..    ||:..|...          ||
Mouse   202 ETLEVSSAVKRWVRADS----------TTNKNKLEVTVQS----HRESCDTLDISVPPGSKNLPF 252

  Fly   302 ---------------------MIGFFRGPELIKATAHSSHHRSKRSASHP------------RKR 333
                                 |||..:...|:| ||.:::..:..|....            .:|
Mouse   253 FVVFSNDRSNGTKETRLELKEMIGHEQETMLVK-TAKNAYQVAGESQEEEGLDGYTAVGPLLARR 316

  Fly   334 KKSVSPNNVPLLEPMESTRSCQMQTLYIDFKDLGWHDWIIAPEGYGAFYCSGECNFPLNAHMNAT 398
            |:|..           ::..||..:|.::|:|:||..|||||:.|.|:.|.|.|.|||...:..|
Mouse   317 KRSTG-----------ASSHCQKTSLRVNFEDIGWDSWIIAPKEYDAYECKGGCFFPLADDVTPT 370

  Fly   399 NHAIVQTLVHLLEPKKVPKPCCAPTRLGALPVLYHLNDENVNLKK--YRNMIVKSCGC 454
            .||||||||||..|.||.|.||.||:|..:.:||. :|..|...|  |..|.|..|||
Mouse   371 KHAIVQTLVHLKFPTKVGKACCVPTKLSPISILYK-DDMGVPTLKYHYEGMSVAECGC 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 54/315 (17%)
TGFB 354..455 CDD:214556 51/103 (50%)
Gdf2NP_062379.3 TGFb_propeptide 75..256 CDD:279078 47/259 (18%)
TGF_beta 325..427 CDD:278448 49/102 (48%)
Interaction with ENG. /evidence=ECO:0000250|UniProtKB:Q9UK05 401..415 4/14 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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