DRSC/TRiP Functional Genomics Resources

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Protein Alignment gbb and LEFTY1

DIOPT Version :9

Sequence 1:NP_001286786.1 Gene:gbb / 37778 FlyBaseID:FBgn0024234 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_066277.1 Gene:LEFTY1 / 10637 HGNCID:6552 Length:366 Species:Homo sapiens


Alignment Length:393 Identity:81/393 - (20%)
Similarity:134/393 - (34%) Gaps:136/393 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 GEQ---------QKNFITDLDKRAIDESDIIMTFLNKRHHNVDELRHEHGRR------------- 177
            |||         |...:..||:..::|. :|.|.:..::  |..|:..||.|             
Human    24 GEQLLGSLLRQLQLKEVPTLDRADMEEL-VIPTHVRAQY--VALLQRSHGDRSRGKRFSQSFREV 85

  Fly   178 -------------LWFDV-SNVPNDNYLVMAELRIYQNA-------NEGKWLTANREFTITVYAI 221
                         |.|.: ..:|.::.||.|.||::|..       ..|:....:....:||..:
Human    86 AGRFLALEASTHLLVFGMEQRLPPNSELVQAVLRLFQEPVPKAALHRHGRLSPRSARARVTVEWL 150

  Fly   222 GTGTLGQHTMEPLSSVNTTGDYVGWLELNVTEGLHEWLVKSKDNHGIYIGAHAVNRPDREVKLDD 286
            .....|.:....:.|...:....||...:|||.::.|              ..::||        
Human   151 RVRDDGSNRTSLIDSRLVSVHESGWKAFDVTEAVNFW--------------QQLSRP-------- 193

  Fly   287 IGLIHRKVDDEFQPFMIGFFRGPELIKATAHSSHHRSKRSASHPRKRKKSV-SPNNV--PLLE-- 346
                                |.|.|::.:....|.....|.:|...|..|. :|..:  |.||  
Human   194 --------------------RQPLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELH 238

  Fly   347 -----------------PM-ESTRSCQMQTLYIDFKDLGW-HDWIIAPEGYGAFYCSGECNFPLN 392
                             || |.||.|: |.:|||.:.:.| .:|::.|.|:.|:.|.|.|..|..
Human   239 TLDLGDYGAQGDCDPEAPMTEGTRCCR-QEMYIDLQGMKWAENWVLEPPGFLAYECVGTCRQPPE 302

  Fly   393 AHMNATNHAIVQTLVHLLEPKKVPKPCCAPTRLGALPVLYHLND------ENVNLKKYRNMIVKS 451
            |             :....|...|:.|.| :...:||::..:.:      :.|:|.   ||.|:.
Human   303 A-------------LAFKWPFLGPRQCIA-SETDSLPMIVSIKEGGRTRPQVVSLP---NMRVQK 350

  Fly   452 CGC 454
            |.|
Human   351 CSC 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gbbNP_001286786.1 TGFb_propeptide 44..305 CDD:279078 36/212 (17%)
TGFB 354..455 CDD:214556 28/108 (26%)
LEFTY1NP_066277.1 TGFb_propeptide <106..214 CDD:307025 24/149 (16%)
TGF_beta 263..353 CDD:306518 27/107 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3900
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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