DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5554 and Tmx3

DIOPT Version :10

Sequence 1:NP_001286784.1 Gene:CG5554 / 37775 FlyBaseID:FBgn0034914 Length:330 Species:Drosophila melanogaster
Sequence 2:NP_648847.3 Gene:Tmx3 / 39775 FlyBaseID:FBgn0036579 Length:430 Species:Drosophila melanogaster


Alignment Length:196 Identity:52/196 - (26%)
Similarity:86/196 - (43%) Gaps:31/196 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MHSTSYFVAATCAALLL-LAATAQSTAAAQSGLQPGGKLIELDEDNWHLMLQGEWMIEFFAPWCP 64
            |...|.::....:|||| |.:|..|:           |::||.:....:..:|:|::.|:||||.
  Fly     1 MSPNSMWIFGLISALLLTLGSTGLSS-----------KVLELSDRFIDVRHEGQWLVMFYAPWCG 54

  Fly    65 ACKNLAPTWERFARVAKDVQVQVAKIDVTTSPSLSGRFFVTALPTIYHVKDGEFRQYRGARDGDA 129
            .||...|.:...|:......|:|.::|.|..|:.:..|.|...|||..:|......|.|.|..|.
  Fly    55 YCKKTEPIFALVAQALHATNVRVGRLDCTKYPAAAKEFKVRGYPTIMFIKGNMEFTYNGDRGRDE 119

  Fly   130 LLYFVKKQQWQSIEPLSAWKKPDTTHMSVLSYFFKLSHTLKHTQKLFKDFNGRLQEEYGLPTWGS 194
            |:.:..:.....::.::..:..|         ..|.|||      :|..|.|  |:| |: .|.:
  Fly   120 LVDYALRMSGPPVQLVTRTESVD---------MLKGSHT------IFFIFVG--QQE-GV-VWDT 165

  Fly   195 Y 195
            |
  Fly   166 Y 166

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5554NP_001286784.1 PDI_a_TMX 36..136 CDD:239292 30/99 (30%)
Tmx3NP_648847.3 PDI_a_TMX3 27..128 CDD:239298 30/100 (30%)
ER_PDI_fam 28..>355 CDD:273457 42/158 (27%)

Return to query results.
Submit another query.