DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5554 and Tmx4

DIOPT Version :9

Sequence 1:NP_001286784.1 Gene:CG5554 / 37775 FlyBaseID:FBgn0034914 Length:330 Species:Drosophila melanogaster
Sequence 2:NP_001093999.1 Gene:Tmx4 / 296182 RGDID:1305146 Length:336 Species:Rattus norvegicus


Alignment Length:341 Identity:127/341 - (37%)
Similarity:187/341 - (54%) Gaps:33/341 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 FVAATCAALLLLAATAQSTA--AAQSGLQPGGKLIELDEDNWHLMLQGEWMIEFFAPWCPACKNL 69
            |:||..||....|...:..|  |.:|.:||      :...||.|:::||||::|:|||||:|:..
  Rat    10 FLAAWLAAAAAEAEGLEQAALPAEESRVQP------MTASNWTLVMEGEWMLKFYAPWCPSCQQT 68

  Fly    70 APTWERFARVAKDVQVQVAKIDVTTSPSLSGRFFVTALPTIYHVKDGEFRQYRGARDGDALLYFV 134
            ...||.||:..:.:|:.|.|:||...|.||||||||.||..:|.|||.||:|||....:.|..::
  Rat    69 DSEWETFAKNGETLQISVGKVDVIQEPGLSGRFFVTTLPAFFHAKDGIFRRYRGPGIYEDLQNYI 133

  Fly   135 KKQQWQSIEPLSAWKKPDTTHMSVLSYFFKLSHTLKHTQKLFKDFNGRLQEEYGLPTWGSYALFA 199
            .:::|||:|||:.||.|.:..||.::..|.:|..:.|....|       ....|:|.|.||..|.
  Rat   134 LEKKWQSVEPLTGWKSPASLTMSGMAGLFSISGKIWHLHNYF-------TVTLGIPAWCSYVFFV 191

  Fly   200 IATIFVGAALGLLLVCLVDFVYP--PKKSQRQSFSESQDNLTEGLEDLA-TEEIEDDGDAEENDD 261
            |||:..|..:||:||.:.:..|.  |:.|..:|..|.:....:|.|.|. .||.:||.:.|||.|
  Rat   192 IATLVFGLFMGLILVVISECFYVPLPRASSERSEQEQRSEEAQGAEQLQDAEEEKDDSNEEENKD 256

  Fly   262 EQRDSDEEEQE--DDDEEEEDSEEQVGDLA--TKEKEADSEPE---KEEKPEPK----QAGDAAP 315
            ...|.:||:::  ||||.|||.||.  :||  ..|:::||..:   ||....||    ::.|...
  Rat   257 SLVDDEEEKEDLGDDDEVEEDEEED--NLAGIMDEEKSDSNEQGVVKEGSVSPKDEEARSADTQD 319

  Fly   316 EKTEQVRKRKPR--KG 329
            ...:.:|:||.:  ||
  Rat   320 VVEDSLRQRKSQHAKG 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5554NP_001286784.1 PDI_a_TMX 36..136 CDD:239292 44/99 (44%)
Tmx4NP_001093999.1 Thioredoxin_like 35..135 CDD:294274 47/105 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 104 1.000 Domainoid score I6599
eggNOG 1 0.900 - - E2759_KOG0913
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 213 1.000 Inparanoid score I3561
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1481386at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46120
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR46107
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
109.930

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