DRSC/TRiP Functional Genomics Resources

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Protein Alignment GlyT and slc6a4b

DIOPT Version :9

Sequence 1:NP_611836.2 Gene:GlyT / 37772 FlyBaseID:FBgn0034911 Length:1188 Species:Drosophila melanogaster
Sequence 2:NP_001170930.1 Gene:slc6a4b / 664770 ZFINID:ZDB-GENE-060314-2 Length:591 Species:Danio rerio


Alignment Length:598 Identity:234/598 - (39%)
Similarity:359/598 - (60%) Gaps:55/598 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 LDATGPGAGGAGESEH---------ERGTWTGRFDFLLSLLGYSVGLGNVWRFPYLCYNNGGGAF 95
            |.|.|| ...||.:.:         .|..|:.:.|||||::|::|.|||||||||:||.||||||
Zfish    13 LCAPGP-PNNAGYNSNPVPVIIQTESRDKWSKKMDFLLSVIGFAVDLGNVWRFPYICYQNGGGAF 76

  Fly    96 LIPFTIMLVIAGLPLMFMELSFGQYAALGPVAVYRRFCPLFRGLGTGMILVSAIVMLYYNLIIAW 160
            |||:.:|.|..|:||.:|||:.||:...|.:::::..||:|:|:|..:.:::..|..|||.||||
Zfish    77 LIPYVLMAVFGGVPLFYMELALGQFHRTGAISIWKHICPIFKGIGFAICIIALYVSFYYNTIIAW 141

  Fly   161 TIFYMFASFAPVLPWQNCEPAWSTKYCFSYAQADQCEATNGTYYLRTCHNATSAAENNITTLALG 225
            .:||.::||:..|||.:|:..|:|:.|.:|...|....||                         
Zfish   142 ALFYFYSSFSSTLPWTSCDNDWNTENCTNYFGKDNVTWTN------------------------- 181

  Fly   226 ALKRPPAEEYFNNFVLGL--SKGIEETGSIKLSLAACLFLAWTIVFLCLCKGVQSSGKVVYFTAL 288
             ..|.||||::...||.:  |.|:...|.|:..|..||||.:|||:..|.|||::|||||:.||.
Zfish   182 -YSRSPAEEFYTRNVLAVHESSGLGNVGYIRWQLMLCLFLIFTIVYFSLWKGVKTSGKVVWVTAT 245

  Fly   289 FPYVVLVILFVRGVTLPGASTGILFYLTPDWKQLANAQVWGDAAVQIFFALSPAWGGLITLSSYN 353
            .|||||:||.:||.|||||..|::|||.|.|::|....||.|||.||||:|.|.:|.|:.|||||
Zfish   246 LPYVVLLILMIRGATLPGAWKGVVFYLNPKWEKLKETSVWVDAAAQIFFSLGPGFGVLLALSSYN 310

  Fly   354 KFSNNCYKDSLIVAFCNIATSFFAGLVIFSIIGFLAHELNVDVEKVV-DQGAGLAFIVYPEVVTR 417
            .|:||||:|:::.:..|..|||.:|.|||:::|::|.:.||:||.|. |:|..|.||.|||.:..
Zfish   311 PFTNNCYRDAIVTSLVNCLTSFVSGFVIFTVLGYMAEQRNVNVEDVARDKGPSLLFITYPEAIAN 375

  Fly   418 LPVSPVWAVLFFVMLLTLGLDSQFALMETVTTAILDRFPNLRQYKIWV-VLSVAIFGYIGGLGFT 481
            :..|..:|::||||::||||||.|..:|.:.||::|.:|::..::..: ||.:.:..::|.|...
Zfish   376 MVGSTFFAIIFFVMMITLGLDSTFGGLEAIITAVMDEYPDVLSHRRELFVLGLVVVCFLGSLSTL 440

  Fly   482 TNSGMYWLQLMDKYAANWSVLLIAISECILIAWIYGSQRFLNDIQGMIGKRSWFWNFFWGIMWRY 546
            |..|.|.::|::::....|::.|...|...::|.||..||.|||:.|:|   :....||.:.|..
Zfish   441 TKGGAYVVKLLEEFGVGSSIIAIVFLEATAVSWFYGINRFSNDIKSMLG---YTPGLFWKVCWVA 502

  Fly   547 ITPATLLFILFFNWVEYKPAKYGHYVYPMWADAVGWIVGL-----LPVLVIFLVAFQEIWRAPMS 606
            |:||.|.:|:..:.:..:......|.:|.|:..||:|:|.     :|:.:::.:    :| .|.|
Zfish   503 ISPAFLAYIIISSLLNPQTLTLFDYEFPDWSITVGYIIGASSFIWIPIYMVYKL----VW-TPGS 562

  Fly   607 LSFRDRIKHLLQP 619
            |  :.|:...|:|
Zfish   563 L--KQRLAVCLRP 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GlyTNP_611836.2 SNF 57..603 CDD:249680 222/554 (40%)
slc6a4bNP_001170930.1 SLC6sbd_SERT 38..574 CDD:271399 228/572 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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