DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GlyT and slc6a4a

DIOPT Version :9

Sequence 1:NP_611836.2 Gene:GlyT / 37772 FlyBaseID:FBgn0034911 Length:1188 Species:Drosophila melanogaster
Sequence 2:NP_001035061.1 Gene:slc6a4a / 664719 ZFINID:ZDB-GENE-060314-1 Length:646 Species:Danio rerio


Alignment Length:647 Identity:249/647 - (38%)
Similarity:372/647 - (57%) Gaps:71/647 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 QSSKSGSAGVGGVGGGGGVVCPSTAISGCASG-----------TALIQLDATGPGAGGAGESEHE 56
            :..|||| |.|.|..|.....|.:...|..:|           |.::|..:..|          .
Zfish    37 KDQKSGS-GPGQVSNGYRSTSPQSPKEGAGTGTDRVNTPGTFRTLVVQQTSLDP----------P 90

  Fly    57 RGTWTGRFDFLLSLLGYSVGLGNVWRFPYLCYNNGGGAFLIPFTIMLVIAGLPLMFMELSFGQYA 121
            |.||:.:.|||||::||:|.|||||||||:||.|||||||:|:.:|.|..|:||.:|||:.||:.
Zfish    91 RETWSKKMDFLLSVIGYAVDLGNVWRFPYICYQNGGGAFLLPYLLMAVFGGVPLFYMELALGQFH 155

  Fly   122 ALGPVAVYRRFCPLFRGLGTGMILVSAIVMLYYNLIIAWTIFYMFASFAPVLPWQNCEPAWSTKY 186
            ..|.:::::..||:|:|:|..:.:::..:..|||.|:||.::|:.:||...|||..|...|:|..
Zfish   156 RSGCISIWKHVCPIFKGIGFAICIIALYIAFYYNTIMAWALYYLLSSFRATLPWTTCNNRWNTPN 220

  Fly   187 CFSYAQADQCEATNGTYYLRTCHNATSAAENNITTLALGALKRPPAEEYFNNFVL--GLSKGIEE 249
            |              |:||.|..| .|...|:|:          ||||::...||  .||.|:.:
Zfish   221 C--------------THYLSTDLN-VSWTNNSIS----------PAEEFYVRQVLQVHLSPGLHQ 260

  Fly   250 TGSIKLSLAACLFLAWTIVFLCLCKGVQSSGKVVYFTALFPYVVLVILFVRGVTLPGASTGILFY 314
            .|.:...||.||...:|:|:..:.|||::|||||:.||.|||:||:||.:||.|||||..|::||
Zfish   261 LGWVSWQLALCLLFIFTVVYFSIWKGVKTSGKVVWVTATFPYLVLLILLIRGATLPGAWRGVVFY 325

  Fly   315 LTPDWKQLANAQVWGDAAVQIFFALSPAWGGLITLSSYNKFSNNCYKDSLIVAFCNIATSFFAGL 379
            |.||||:|....||.|||.||||:|.|.:|.|:..:|||.|.||||||:||.:..|..|||.:|.
Zfish   326 LKPDWKKLLTTTVWLDAAAQIFFSLGPGFGVLLAFASYNPFHNNCYKDALITSSVNCLTSFLSGF 390

  Fly   380 VIFSIIGFLAHELNVDVEKVV-DQGAGLAFIVYPEVVTRLPVSPVWAVLFFVMLLTLGLDSQFAL 443
            |||:::|::|......||.|. |.|..|.||:|.|.:..:|.:..:|::||:|::.|||||.||.
Zfish   391 VIFTVLGYMAEMRQQGVETVAKDAGPSLLFIIYAEAIANMPAATFFAIIFFLMIIMLGLDSTFAG 455

  Fly   444 METVTTAILDRFPN-LRQYKIWVVLSVAIFGYIGGLGFTTNSGMYWLQLMDKYAANWSVLLIAIS 507
            :|.|.||:||.||: |.:.:.|.||.:....|:|.|...|..|.:.::|.::||...:|:.:...
Zfish   456 LEGVITAMLDEFPHLLARRREWFVLGLVCVCYLGALSTLTYGGAFVVKLFEEYATGPAVITVVFL 520

  Fly   508 ECILIAWIYGSQRFLNDIQGMIGKRSWFWNFFWGIMWRYITPATLLFILFFNWVEYKP-AKYGHY 571
            |.|.::|.||:.||.||:|.|:|   :....||.:.|..|.|..||||: .:::.:.| .|...|
Zfish   521 EVIAVSWFYGTTRFCNDVQLMLG---FAPGLFWRVCWIAICPCFLLFII-VSFLAFPPEVKLFDY 581

  Fly   572 VYPMWADAVGWIVGL-----LPVLVIF-LVAFQEIWRAPMSLSFRDRIKHLLQPTAEWGPAG 627
            :||.|...:|:.:|:     :|..::: ||..:.        :|:.|:...:.|.|. |.:|
Zfish   582 LYPFWTTVLGYCIGVSSFICVPSYMVYHLVTTKG--------TFQQRLLKGITPEAP-GSSG 634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GlyTNP_611836.2 SNF 57..603 CDD:249680 229/556 (41%)
slc6a4aNP_001035061.1 SLC5-6-like_sbd 91..628 CDD:294310 231/573 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.