DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GlyT and Slc6a6

DIOPT Version :9

Sequence 1:NP_611836.2 Gene:GlyT / 37772 FlyBaseID:FBgn0034911 Length:1188 Species:Drosophila melanogaster
Sequence 2:XP_008761345.1 Gene:Slc6a6 / 29464 RGDID:61912 Length:631 Species:Rattus norvegicus


Alignment Length:591 Identity:248/591 - (41%)
Similarity:352/591 - (59%) Gaps:50/591 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 PGAGGAGESE---HERGTWTGRFDFLLSLLGYSVGLGNVWRFPYLCYNNGGGAFLIPFTIMLVIA 106
            ||.....|::   .:|..|:.:.||:||:.|..||||||||||||||.|||||||||:.|.|..:
  Rat    36 PGTRPEDEADGKPPQREKWSSKIDFVLSVAGGFVGLGNVWRFPYLCYKNGGGAFLIPYFIFLFGS 100

  Fly   107 GLPLMFMELSFGQYAALGPVAVYRRFCPLFRGLGTGMILVSAIVMLYYNLIIAWTIFYMFASFAP 171
            |||:.|:|:..|||.:.|.:..:.:.||||.|:|...|::.:::.:||.:|:||..:|:|.||..
  Rat   101 GLPVFFLEVIIGQYTSEGGITCWEKICPLFSGIGYASIVIVSLLNVYYIVILAWATYYLFQSFQK 165

  Fly   172 VLPWQNCEPAWSTKYCFSYAQADQCEATNGTYYLRTCHNATSAAENNITTLALGALKRPPAEEYF 236
            .|||.:|..:|:|..|.     :.....|.::::     :.|||  |.|:         |..|::
  Rat   166 DLPWAHCNHSWNTPQCM-----EDTLRRNESHWV-----SLSAA--NFTS---------PVIEFW 209

  Fly   237 NNFVLGLSKGIEETGSIKLSLAACLFLAWTIVFLCLCKGVQSSGKVVYFTALFPYVVLVILFVRG 301
            ...||.||.||:..||:|..||.||.|.|.:.|.|:.|||:|:||||||||.||:.:|::|.|||
  Rat   210 ERNVLSLSSGIDHPGSLKWDLALCLLLVWLVCFFCIWKGVRSTGKVVYFTATFPFAMLLVLLVRG 274

  Fly   302 VTLPGASTGILFYLTPDWKQLANAQVWGDAAVQIFFALSPAWGGLITLSSYNKFSNNCYKDSLIV 366
            :|||||..||.|||.|:..:|.:.|||.||..||||:.:...|.:.:|.||||:..|.|:|.:::
  Rat   275 LTLPGAGEGIKFYLYPNISRLEDPQVWIDAGTQIFFSYAICLGAMTSLGSYNKYKYNSYRDCMLL 339

  Fly   367 AFCNIATSFFAGLVIFSIIGFLAHELNVDVEKVVDQGAGLAFIVYPEVVTRLPVSPVWAVLFFVM 431
            ...|..|||.:|..||||:||:|.|..||:..|.:.|.|||||.||:.||.:|:...|::|||:|
  Rat   340 GCLNSGTSFVSGFAIFSILGFMAQEQGVDIADVAESGPGLAFIAYPKAVTMMPLPTFWSILFFIM 404

  Fly   432 LLTLGLDSQFALMETVTTAILDRFPNL------RQYKIWVVLSVAIFGYIGGLGFTTNSGMYWLQ 490
            ||.|||||||..:|...|:::|.:|:.      |:..|.:|.|::   |:.||...|..|||..|
  Rat   405 LLLLGLDSQFVEVEGQITSLVDLYPSFLRKGYRREIFIAIVCSIS---YLLGLTMVTEGGMYVFQ 466

  Fly   491 LMDKYAANWSVLL-IAISECILIAWIYGSQRFLNDIQGMIGKRSWFWNFFWGIMWRYITPATLLF 554
            |.|.|||:...|| :|..||.:||||||.....:.|:.|||.|...|..:   .|..||||..:.
  Rat   467 LFDYYAASGVCLLWVAFFECFVIAWIYGGDNLYDGIEDMIGYRPGPWMKY---SWAVITPALCVG 528

  Fly   555 ILFFNWVEYKPAKYGH-YVYPMWADAVGWIVGL-----LPVLVIFLVAFQEIWRAPMSLSFRDRI 613
            ...|:.|:|.|..|.. |.||.||..:||.:.|     :|::::.|:...|   .|:    |.||
  Rat   529 CFIFSLVKYVPLTYNKVYRYPDWAIGLGWGLALSSMVCIPLVIVILLCRTE---GPL----RVRI 586

  Fly   614 KHLLQP 619
            |:|:.|
  Rat   587 KYLITP 592

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GlyTNP_611836.2 SNF 57..603 CDD:249680 238/558 (43%)
Slc6a6XP_008761345.1 SLC5-6-like_sbd 51..592 CDD:382020 244/574 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.