DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GlyT and snf-7

DIOPT Version :9

Sequence 1:NP_611836.2 Gene:GlyT / 37772 FlyBaseID:FBgn0034911 Length:1188 Species:Drosophila melanogaster
Sequence 2:NP_499702.2 Gene:snf-7 / 176723 WormBaseID:WBGene00004906 Length:705 Species:Caenorhabditis elegans


Alignment Length:608 Identity:206/608 - (33%)
Similarity:312/608 - (51%) Gaps:80/608 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 ERGTWTGRFDFLLSLLGYSVGLGNVWRFPYLCYNNGGGAFLIPFTIMLVIAGLPLMFMELSFGQY 120
            :|..:.| .:..||.||.:|||||:||||...|.|||.:|||.:.:..::..:|.:.||.:.|||
 Worm    65 DRQAFRG-IESFLSSLGQAVGLGNIWRFPTTAYKNGGLSFLIAYVVCGILFAVPAIHMEFALGQY 128

  Fly   121 AALGPVAVYRRFCPLFRGLGTGMILVSAIVMLYYNLIIAWTIFYMF-ASFAPVLPWQNCEPAWS- 183
            ||..|.|.:||..|:..|:|....||.||:.:||.::|:|.:.|:| ..:|..:  ..|...|: 
 Worm   129 AAKSPPAAFRRMMPILEGVGWMTCLVGAIIGVYYMIVISWIVLYLFNIIYATKI--SKCNNDWNK 191

  Fly   184 -----------TKYCFSYAQADQCEATNGT----------YYLRTCHNATSAAENNITTLALGAL 227
                       .|.|..|........||.|          |....|.|||:      ..||:|  
 Worm   192 NRSTICYEGVKQKLCSGYMLNSSLVMTNLTRNASVHSKMMYIDGKCQNATN------MKLAVG-- 248

  Fly   228 KRPPAEEYFNNFVLGLSKGIEETGSIKLSLAACLFLAWTIVFLCLCKGVQSSGKVVYFTALFPYV 292
                .|::|.|||:..|.|..:..||.:.:.|.:.:.|.|..:.|.:|:::.||:.|:|.|.||.
 Worm   249 ----TEQFFTNFVVKPSTGFTDFNSINVPMLAAVAVCWVIAIISLIRGMKAIGKLSYYTVLLPYA 309

  Fly   293 VLVILFVRGVTLPGASTGI--LFYLTP------DWKQLANAQVWGDAAVQIFFALSPAWGGLITL 349
            :::.|.:||:||.|||||:  ||:..|      |:..|.:..||..|.:|:.|:||...|||:.:
 Worm   310 IIIALMIRGLTLEGASTGLHFLFWGKPNEYGHYDFAGLYDPDVWIAALMQMCFSLSIGQGGLMNI 374

  Fly   350 SSYNKFSNNCYKDSLIVAFCNIATSFFAGLVIFSIIGFLAHELNVDV------EKVVDQGAGLAF 408
            .||||.:.|.|:|:.:|..|:...|...|..:||.:||||.:.|:.:      .:||.:|..|||
 Worm   375 GSYNKKTYNWYRDAYLVVLCDTLMSLLGGTAVFSTLGFLAEQRNISISNPKGFNEVVQEGHALAF 439

  Fly   409 IVYPEVVTRLPVSPVWAVLFFVMLLTLGLDSQFALMETVTTAILDRFPNLRQYKIWVVLSVAIFG 473
            |||.|.:.::|...:|..||||||..||:.::..::|||.:.:.|||..|||::...|::|:...
 Worm   440 IVYTEAIAQMPYPFLWYALFFVMLFLLGISTEIVIIETVCSCLADRFHYLRQHRWITVVTVSTTF 504

  Fly   474 YIGGLGFTTNSGMYWLQLMDKYAANWSVLLIAISECILIAWIYGSQRFLNDIQGMIGKRSWFWN- 537
            ::.||..|:::|.||..|.|:|:|..|..:.....|:.:.|.||...|..||:.|       |. 
 Worm   505 FLLGLVMTSDAGFYWFDLYDEYSAGVSATIGTAIMCLTVCWCYGLDNFRADIREM-------WEE 562

  Fly   538 -------------FFWGIMWRYITPATLLFILF-FNWVEYKPAKYGHYVYPMWADAVGWIVGLLP 588
                         :.|.|:||::||...|.|:| :.|.:..|.|.....||...||.||.|..||
 Worm   563 PESRLDKYLGPGAYVWTIVWRFVTPICCLVIMFAWIWDKKYPFKGDSKKYPPVFDAFGWFVAALP 627

  Fly   589 VLVIFLVAFQEIWRAPMSLSFRD 611
            ..|:.:.|...|.|      |:|
 Worm   628 FFVVPVFAGFAIKR------FKD 644

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GlyTNP_611836.2 SNF 57..603 CDD:249680 203/597 (34%)
snf-7NP_499702.2 SLC6sbd 70..598 CDD:271359 187/549 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.