DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GlyT and snf-3

DIOPT Version :9

Sequence 1:NP_611836.2 Gene:GlyT / 37772 FlyBaseID:FBgn0034911 Length:1188 Species:Drosophila melanogaster
Sequence 2:NP_493910.2 Gene:snf-3 / 173493 WormBaseID:WBGene00004902 Length:600 Species:Caenorhabditis elegans


Alignment Length:594 Identity:224/594 - (37%)
Similarity:341/594 - (57%) Gaps:40/594 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 ESEH----ERGTWTGRFDFLLSLLGYSVGLGNVWRFPYLCYNNGGGAFLIPFTIMLVIAGLPLMF 112
            :|:|    :||.|||:||||:|::.|:||||||||||||||.||||:||:.:.|...:|.:|:..
 Worm    21 QSQHSEEPDRGQWTGKFDFLMSMVAYAVGLGNVWRFPYLCYKNGGGSFLVVYMIFFCLAAVPIFL 85

  Fly   113 MELSFGQYAALGPVAVYRRFCPLFRGLGTGMILVSAIVMLYYNLIIAWTIFYMFASFAPVLPWQN 177
            ||::.|||...|.:.:: ..||||||:|.|.::::.:.:.|:.:|:||.:|||.:|.|.|.||:.
 Worm    86 MEVTVGQYLQKGAMEMW-LMCPLFRGVGIGNVVIAFMCIAYFCVIVAWAMFYMISSIAWVFPWET 149

  Fly   178 CEPAWSTKYCFSYAQADQCEATNGTYYLRTCHNATSAAENNITTLALGALKRPPAEEYFNNFVLG 242
            |...|:...|.:..:                 |.|..|.......:.|...:...|:::...||.
 Worm   150 CNNYWNDATCVTGKE-----------------NFTELARIKALVASAGGHTQTSVEQFWEKRVLH 197

  Fly   243 LSKGIEETGSIKLSLAACLFLAWTIVFLCLCKGVQSSGKVVYFTALFPYVVLVILFVRGVTLPGA 307
            .:..|.|.|.|:..|...:..||.||:..|.||:..:.|.|||.||||||::.||.:||:||.||
 Worm   198 DTGDISEFGGIQWELFFIMAAAWLIVYFALWKGITQARKFVYFCALFPYVLIFILLIRGLTLEGA 262

  Fly   308 STGILFYLTPDWKQLANAQVWGDAAVQIFFALSPAWGGLITLSSYNKFSNNCYKDSLIVAFCNIA 372
            .|||.|||.|:..:|.:..||.||..|:|::....:|.||.|.|:|||::||:||::.:.|.|..
 Worm   263 GTGIYFYLKPNATRLLDTAVWKDAGTQVFYSYGVGFGALIALGSHNKFNHNCFKDAITMCFINGC 327

  Fly   373 TSFFAGLVIFSIIGFLAHELNVDVEKVVDQGAGLAFIVYPEVVTRLPVSPVWAVLFFVMLLTLGL 437
            ||..||..:|||:|:::|....|:.::|..|.||||:.||||.:.||:..|:|||||:|:..|||
 Worm   328 TSITAGFAVFSILGYMSHVAQKDISEIVKPGVGLAFLAYPEVASNLPMKQVFAVLFFLMITILGL 392

  Fly   438 DSQFALMETVTTAILDRFPNLRQYKIWVVLSVAIFGYIGGLGFTTNSGMYWLQLMDKY-AANWSV 501
            |||..:||.:.||:.|.||.||:||...:....:|.:..|:...|:||.:||.|.|.| |:.:::
 Worm   393 DSQVCMMEGLFTALEDAFPILRKYKKQSLGIFCLFFFCIGIPMVTHSGSHWLTLFDAYGASGYAL 457

  Fly   502 LLIAISECILIAWIYGSQRFLNDIQGMIG----KRSWFWNFFWGI--MWRYITPATLLFILFFNW 560
            |.:...|.:.:|:.:|:......:..|||    |         ||  :|::..|||.|.:..|..
 Worm   458 LFVVFFEVVGLAYGFGAHNIRKALHEMIGVTLPK---------GIEYVWKFCAPATSLVLFVFCV 513

  Fly   561 VEYKPAKY-GHYVYPMWADAVGWIVGLLPVLVIFLVAFQEIWRAPMSLSFRDRIKHLLQPTAEW- 623
            |.|.|.|| ....:|.||:|.||.:....::||...|...::.....|:.::|::..|.....: 
 Worm   514 VYYHPVKYPDGKDFPFWANAFGWFLSSCSMVVIPGYAIYYLFFTNKHLTLKERVRKGLNLDGSFE 578

  Fly   624 GPAGRPCVN 632
            .||.:..||
 Worm   579 SPAKKNLVN 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GlyTNP_611836.2 SNF 57..603 CDD:249680 215/553 (39%)
snf-3NP_493910.2 SLC6sbd-TauT-like 30..571 CDD:271387 217/567 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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