DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GlyT and snf-2

DIOPT Version :9

Sequence 1:NP_611836.2 Gene:GlyT / 37772 FlyBaseID:FBgn0034911 Length:1188 Species:Drosophila melanogaster
Sequence 2:NP_492396.2 Gene:snf-2 / 172701 WormBaseID:WBGene00004901 Length:746 Species:Caenorhabditis elegans


Alignment Length:620 Identity:202/620 - (32%)
Similarity:316/620 - (50%) Gaps:64/620 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 TALIQLDATGPGA--------------GGAGESEH---------ERGTWTGRFDFLLSLLGYSVG 76
            |..:|...|.|.:              |||....:         :|..:.| .:.|||.||.::|
 Worm    64 TKTVQSTITNPVSFLDSEVTAKEYVKDGGAARKAYRDAIQVENTDRQAFRG-IESLLSSLGQAIG 127

  Fly    77 LGNVWRFPYLCYNNGGGAFLIPFTIMLVIAGLPLMFMELSFGQYAALGPVAVYRRFCPLFRGLGT 141
            |||:||||.:.|.|||.:|||.:.|...:..:|.:.||.:.|||||..|.||:||..|...|:|.
 Worm   128 LGNIWRFPTVAYQNGGTSFLIVYIICAFVFAVPAIHMEFALGQYAAKSPPAVFRRIMPALEGVGW 192

  Fly   142 GMILVSAIVMLYYNLIIAWTIFYMFASFAPVLPWQNCEPAWSTKYCFSYAQADQCEATNGTYYLR 206
            ...:|.|::.:||.::|:|.:.|:...|. |.....|:..|:...|:..::..:|   |...|..
 Worm   193 MTCIVGAVIGVYYMILISWIVLYIINIFY-VNNMGRCDNPWNQNNCYDGSEQSRC---NKGLYSN 253

  Fly   207 TCHNATSAAENNITTLALGALKR-----------------PPAEEYFNNFVLGLSKGIEETGSIK 254
            ...||:|.....:..|.....||                 ...|::|:..|:..|.|..:..||.
 Worm   254 MTANASSFLNTTMAPLMSSGSKRILYINGKCQDATNMSVEVGTEQFFSKSVIRPSAGFTDFNSIN 318

  Fly   255 LSLAACLFLAWTIVFLCLCKGVQSSGKVVYFTALFPYVVLVILFVRGVTLPGASTGI--LFYLTP 317
            |.:...:.|.|.|..:.|.:|:::.||:.|.|.:.||.::|.|.:.||:||||..|:  ||..| 
 Worm   319 LPILGAVALCWVIAAVVLIRGMKAIGKLSYVTVILPYFIIVSLLICGVSLPGAKDGLYHLFGQT- 382

  Fly   318 DWKQLANAQVWGDAAVQIFFALSPAWGGLITLSSYNKFSNNCYKDSLIVAFCNIATSFFAGLVIF 382
            |:..|...:.|..|..||.|:||...|||:.::||||.:.|.|:|..|:.|.:...|...|:.:|
 Worm   383 DFNYLYKRETWTAALQQICFSLSIGQGGLMNIASYNKKTYNWYRDVYIIVFLDTLMSILGGITVF 447

  Fly   383 SIIGFLAHELNV---DVE---KVVDQGAGLAFIVYPEVVTRLPVSPVWAVLFFVMLLTLGLDSQF 441
            |.:||||:|..:   |::   .:|.:|..||||||.|.:..:||..:|..|||:||..||:.::.
 Worm   448 STLGFLAYERGINSTDIDAFNHIVKEGHALAFIVYTEAIAEMPVPYLWYALFFIMLFLLGISTEV 512

  Fly   442 ALMETVTTAILDRFPNLRQYKIWVVLSVAIFGYIGGLGFTTNSGMYWLQLMDKYAANWSVLLIAI 506
            .::|.|.:.:.|||..||:.:...||||:...::.||..||::|.||..:.|:|:...|......
 Worm   513 VIVEIVCSCLADRFRYLRERRWLTVLSVSAVFFLLGLVMTTDAGFYWFDMFDEYSTGISATFGTA 577

  Fly   507 SECILIAWIYGSQRFLNDIQGMIGK-RSWFWN------FFWGIMWRYITP-ATLLFILFFNWVEY 563
            ..|:.:.|.||:..|..||..|.|: .||...      :||.::|:::|| .:||.:..:.|.:.
 Worm   578 IMCMTVFWCYGTNHFREDIAVMWGEPESWLATCLGPAAYFWTLIWKFVTPVCSLLMMGLWIWEKK 642

  Fly   564 KPAKYGHYVYPMWADAVGWIVGLLPVLVI--FLVA 596
            .|.|....:||...||:||.:.::|.|||  |.:|
 Worm   643 YPHKGDGKIYPPVFDALGWFIAVVPFLVIPGFAIA 677

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GlyTNP_611836.2 SNF 57..603 CDD:249680 195/575 (34%)
snf-2NP_492396.2 SLC6sbd 113..638 CDD:271359 179/530 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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