DRSC/TRiP Functional Genomics Resources

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Protein Alignment GlyT and slc6a1

DIOPT Version :9

Sequence 1:NP_611836.2 Gene:GlyT / 37772 FlyBaseID:FBgn0034911 Length:1188 Species:Drosophila melanogaster
Sequence 2:XP_002941943.4 Gene:slc6a1 / 100491859 XenbaseID:XB-GENE-5824076 Length:622 Species:Xenopus tropicalis


Alignment Length:573 Identity:244/573 - (42%)
Similarity:349/573 - (60%) Gaps:37/573 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 ESEHERGTWTGRFDFLLSLLGYSVGLGNVWRFPYLCYNNGGGAFLIPFTIMLVIAGLPLMFMELS 116
            :::.:||||.|:||||||.:||::||||||||||||..|||||||||:.:.||.||:||.|:|.:
 Frog    66 KADDDRGTWKGKFDFLLSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLVFAGIPLFFLETA 130

  Fly   117 FGQYAALGPVAVYRRFCPLFRGLGTGMILVSAIVMLYYNLIIAWTIFYMFASFAPVLPWQNCEPA 181
            .||:.::|.:.|: :..|:|:|:|...:::|..:.:||.:||||.::|:|.||:..||||:|:.:
 Frog   131 LGQFTSIGGLGVW-KLAPMFKGVGMAAVVLSFWLNIYYIVIIAWALYYLFNSFSSTLPWQSCDNS 194

  Fly   182 WSTKYCFSYAQADQCEATNGTYYLRTCHNATSAAENNITTLALGALKRPPAEEYFNNFVLGLSKG 246
            |:|:.|||            .|.|....|.|||                 ..|::...:..::.|
 Frog   195 WNTERCFS------------NYSLNDTSNLTSA-----------------VTEFWERNMHQMTGG 230

  Fly   247 IEETGSIKLSLAACLFLAWTIVFLCLCKGVQSSGKVVYFTALFPYVVLVILFVRGVTLPGASTGI 311
            :.|.|:|:..||..|.|||.:|:..:.|||:.:||||||:|.:||.:|||||.||:|||||..||
 Frog   231 LGEPGNIRWPLACTLALAWIMVYFSIWKGVEWTGKVVYFSATYPYFMLVILFFRGITLPGAMDGI 295

  Fly   312 LFYLTPDWKQLANAQVWGDAAVQIFFALSPAWGGLITLSSYNKFSNNCYKDSLIVAFCNIATSFF 376
            .||:|||:.:|:|::||.|||.||||:.....|.||.|.|||.|.||.|:||:||...|..||.|
 Frog   296 RFYITPDFSKLSNSEVWMDAATQIFFSYGLGLGSLIALGSYNAFDNNIYRDSIIVCGINSTTSMF 360

  Fly   377 AGLVIFSIIGFLAHELNVDVEKVVDQGAGLAFIVYPEVVTRLPVSPVWAVLFFVMLLTLGLDSQF 441
            ||.|||||:||::|.....::::...|.||||:.||:.||:||:||||::|||.||:.|||||||
 Frog   361 AGFVIFSIVGFMSHITKKPIQELAASGPGLAFLAYPQAVTQLPMSPVWSILFFSMLVMLGLDSQF 425

  Fly   442 ALMETVTTAILDRFPN-LRQYKIWVVLSVAIFGYIGGLGFTTNSGMYWLQLMDKYAANWSVLL-I 504
            ..:|...||::|.:|. ||..|...:..|....:|.|....|..|:|..:|.|.|:|:...|| :
 Frog   426 CTVEGFITALVDEYPQCLRSRKKVFIAMVCFISFIIGFSNITQGGLYVFKLFDYYSASGMCLLFL 490

  Fly   505 AISECILIAWIYGSQRFLNDIQGMIGKRSWFWNFFWGIMWRYITPATLLFILFFNWVEYKPAKYG 569
            ...|.:.|:|.||..||..||:.|||.:...|   |.:.|.|.||...|.:..|:..|..|...|
 Frog   491 VFFETVSISWCYGVDRFYQDIEEMIGYQPCSW---WKLCWAYFTPCICLGVFCFSVFEMTPLTLG 552

  Fly   570 HYVYPMWADAVGWIVGLLPVLVIFLVAFQEIWRAPMSLSFRDRIKHLLQPTAE 622
            .||||.|...:||::.|..  ::|:..:..........:.|.|.:.:.||..|
 Frog   553 RYVYPAWGQGIGWLMALSS--MVFIPGYMLYLLLTTKGTLRQRFREMTQPKME 603

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GlyTNP_611836.2 SNF 57..603 CDD:249680 239/547 (44%)
slc6a1XP_002941943.4 SLC5-6-like_sbd 62..611 CDD:382020 244/573 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 1 1.000 - - FOG0000575
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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