DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GlyT and slc6a2

DIOPT Version :9

Sequence 1:NP_611836.2 Gene:GlyT / 37772 FlyBaseID:FBgn0034911 Length:1188 Species:Drosophila melanogaster
Sequence 2:XP_017948962.2 Gene:slc6a2 / 100486589 XenbaseID:XB-GENE-486549 Length:624 Species:Xenopus tropicalis


Alignment Length:581 Identity:247/581 - (42%)
Similarity:348/581 - (59%) Gaps:42/581 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 GESEHERGTWTGRFDFLLSLLGYSVGLGNVWRFPYLCYNNGGGAFLIPFTIMLVIAGLPLMFMEL 115
            ||.:.||..|..:.|||||::|:||.|.||||||:|||.|||||||||:|:.|:|||:||.:|||
 Frog    57 GEGQQEREQWGKKIDFLLSVVGFSVDLANVWRFPFLCYKNGGGAFLIPYTLFLIIAGMPLFYMEL 121

  Fly   116 SFGQYAALGPVAVYRRFCPLFRGLGTGMILVSAIVMLYYNLIIAWTIFYMFASFAPVLPWQNCEP 180
            :.|||...|...|: :.||||:|:|..:||::..|..|||:||||:::|:.:||...|||..|..
 Frog   122 ALGQYNREGAATVW-KICPLFKGVGYTVILIALYVGFYYNVIIAWSLYYLVSSFTSELPWIKCGN 185

  Fly   181 AWSTKYCFSYAQADQCEATNGTYYLRTCHNATSAAENNITTLALGALKRPPAEEYFNNFVLGL-- 243
            .|::..|......:....:..|.|.:                    .|..||.|::...||.|  
 Frog   186 EWNSLNCTDPMLLNMSMISYNTKYSK--------------------FKTTPAAEFYERGVLHLHE 230

  Fly   244 SKGIEETGSIKLSLAACLFLAWTIVFLCLCKGVQSSGKVVYFTALFPYVVLVILFVRGVTLPGAS 308
            |.||.:.|..:..|..||.:...::|..|.|||::|||||:.||..|||||.:|.:||:||||:|
 Frog   231 SNGIHDLGQPRWQLTICLIVVLIVLFFSLWKGVKTSGKVVWITATLPYVVLFVLLIRGITLPGSS 295

  Fly   309 TGILFYLTPDWKQLANAQVWGDAAVQIFFALSPAWGGLITLSSYNKFSNNCYKDSLIVAFCNIAT 373
            .||..||..|.|:|.:|.||.|||.|||::|...:|.||..:|||||.||||:|:|:.:..|..|
 Frog   296 KGISAYLHIDIKRLTDASVWIDAATQIFYSLGAGFGVLIAFASYNKFDNNCYRDALMTSTINCVT 360

  Fly   374 SFFAGLVIFSIIGFLAHELNVDVEKVVDQGAGLAFIVYPEVVTRLPVSPVWAVLFFVMLLTLGLD 438
            ||.:|..||||:|::||:.||::|.|..:||||.||:|||.::.|..|..|||:||:||||||:|
 Frog   361 SFISGFAIFSILGYMAHKHNVNIEDVATEGAGLVFIIYPEAISTLAGSTFWAVVFFIMLLTLGID 425

  Fly   439 SQFALMETVTTAILDRFPNLRQYKIWVVLSVAIFGYIGGLGFTTNSGMYWLQLMDKYAANWSVLL 503
            |....||.|.|.:.|....|::::....|.||...:|..|...||.|:|.|.|:|.:||..|:|.
 Frog   426 SAMGGMEAVITGLADDISILKRHRKLFTLLVAFITFIFALLCITNGGIYVLTLLDTFAAGTSILF 490

  Fly   504 IAISECILIAWIYGSQRFLNDIQGMIGKRSWFWNFFWGIMWRYITPATLLFILFFNWVEYKPAKY 568
            ..:.|.|.::|.||..||..||..|:|.|.   ..:|.:.|::::||.|||::..:.|.|||..|
 Frog   491 AVLIEAIGVSWFYGVDRFSEDIHRMLGFRP---GLYWRLCWKFVSPAFLLFVVIVSIVTYKPLMY 552

  Fly   569 GHYVYPMWADAVGWIVG-----LLPVLVI--FLVAFQEIWRAPMSLSFRDRIKHLLQPTAE 622
            ..|.:|.||:..||.:.     |:|:.:|  ||.         |..|.|:|:.:.:.|..|
 Frog   553 DEYKFPPWANRTGWAIALSSMTLVPIYIIYKFLT---------MRGSLRERLAYCITPENE 604

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GlyTNP_611836.2 SNF 57..603 CDD:249680 238/554 (43%)
slc6a2XP_017948962.2 SLC5-6-like_sbd 63..622 CDD:382020 244/575 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.