DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GlyT and slc6a14.2

DIOPT Version :9

Sequence 1:NP_611836.2 Gene:GlyT / 37772 FlyBaseID:FBgn0034911 Length:1188 Species:Drosophila melanogaster
Sequence 2:XP_002939711.4 Gene:slc6a14.2 / 100485126 XenbaseID:XB-GENE-855704 Length:642 Species:Xenopus tropicalis


Alignment Length:600 Identity:276/600 - (46%)
Similarity:391/600 - (65%) Gaps:20/600 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 ESEHERGTWTGRFDFLLSLLGYSVGLGNVWRFPYLCYNNGGGAFLIPFTIMLVIAGLPLMFMELS 116
            :...|||.|:.:.::|||::||:||||||||||||.:.:||||||||:.|||.:|||||.|:|.|
 Frog    28 DENKERGNWSSKSEYLLSMVGYAVGLGNVWRFPYLTFQHGGGAFLIPYAIMLALAGLPLFFLECS 92

  Fly   117 FGQYAALGPVAVYRRFCPLFRGLGTGMILVSAIVMLYYNLIIAWTIFYMFASFAPVLPWQNCEPA 181
            .||:::|||||:: :..|:|.|:|..|:|:|.:|.:|||:|||::::|:||||..:|||..|. .
 Frog    93 LGQFSSLGPVAMW-KVLPIFEGVGITMVLISTLVTIYYNVIIAYSLYYLFASFTSILPWSECF-E 155

  Fly   182 WSTKYCFSYAQADQCEATNGTYYLRTCHNATSAAENNITTLALGAL---KRPPAEEYFNNFVLGL 243
            |:.:.| |......|..|.|...:... |.|....||.|.:|...|   ...|:::|::...|..
 Frog   156 WADEKC-SKTPKGLCNVTIGEEDIGMV-NLTWVKANNYTCIANSTLYLETELPSKQYWDKVALRR 218

  Fly   244 SKGIEETGSIKLSLAACLFLAWTIVFLCLCKGVQSSGKVVYFTALFPYVVLVILFVRGVTLPGAS 308
            |.|:.|||::...||.||.|||.|:...|.||::||||||||||:|||.||:||.:||.||.||.
 Frog   219 SGGLHETGNVVWYLALCLLLAWIIIGAALFKGIKSSGKVVYFTAIFPYAVLLILLIRGATLEGAY 283

  Fly   309 TGILFYL--TPDWKQLANAQVWGDAAVQIFFALSPAWGGLITLSSYNKFSNNCYKDSLIVAFCNI 371
            .||.||:  ..|..:|:||.||.|||.||||:||.|||||:.|||||||.||||.|:::|...|.
 Frog   284 DGISFYIGTQSDISKLSNADVWKDAATQIFFSLSTAWGGLVALSSYNKFHNNCYADAIMVCITNC 348

  Fly   372 ATSFFAGLVIFSIIGFLAHELNVDVEKVVDQGAGLAFIVYPEVVTRLPVSPVWAVLFFVMLLTLG 436
            .||.|||..||||:|.:|.:...:|:.|||.|..||||.|||.:::|||:|:|::|||.||||||
 Frog   349 LTSVFAGFAIFSILGHMAFKAEKEVKDVVDSGFALAFIAYPEALSQLPVAPLWSILFFFMLLTLG 413

  Fly   437 LDSQFALMETVTTAILDRFPN-LRQYKIWVVLSVAIFGYIGGLGFTTNSGMYWLQLMDKYAANWS 500
            ||||||.:||:||.|.|.:|. :::.:..:.:...|..::.|:...|.||:||:.|:|.:.|.|.
 Frog   414 LDSQFASVETITTTIHDAYPKVMKKMRGIITVGACIMFFLLGILCVTQSGIYWVDLIDYFCAGWG 478

  Fly   501 VLLIAISECILIAWIYGSQRFLNDIQGMIGKRSWFWNFFWGIMWRYITPATLLFILFFNWVEYKP 565
            :|:.||.|.:.|.||||..||:.||:.||||:.|.:..:|.:.|.::||..|..|..::.|.:..
 Frog   479 ILIAAILELVGICWIYGGNRFIEDIEMMIGKKHWIFWLWWRLCWFFLTPLLLTVIFIWSLVTFDT 543

  Fly   566 AKYGHYVYPMWADAVGWIVGLLPVLVIFLVAFQEIWRAPMSLSFRDRIKHLLQPTAEWGPA---- 626
            .|:|:..||.|..|:||.:.:..::.|.::|..:|.:|..:|  .:|...:..||.|||||    
 Frog   544 PKHGNVAYPSWGVALGWCMIIFCIIWIPILAVVKIIKAKGTL--WERFLKICAPTPEWGPALEQH 606

  Fly   627 --GRPCV--NLHAER 637
              ||..:  |||..|
 Frog   607 RLGRYKITDNLHKTR 621

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GlyTNP_611836.2 SNF 57..603 CDD:249680 259/551 (47%)
slc6a14.2XP_002939711.4 SLC5-6-like_sbd 33..612 CDD:382020 271/584 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.