DRSC/TRiP Functional Genomics Resources

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Protein Alignment GlyT and slc6a18

DIOPT Version :9

Sequence 1:NP_611836.2 Gene:GlyT / 37772 FlyBaseID:FBgn0034911 Length:1188 Species:Drosophila melanogaster
Sequence 2:NP_001108369.1 Gene:slc6a18 / 100141332 ZFINID:ZDB-GENE-080219-9 Length:618 Species:Danio rerio


Alignment Length:674 Identity:240/674 - (35%)
Similarity:334/674 - (49%) Gaps:145/674 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 SEHERGTWTGRFDFLLSLLGYSVGLGNVWRFPYLCYNNGGGAFLIPFTIMLVIAGLPLMFMELSF 117
            |..||..|..:..:||:.:|::|||||:|||||||...||||||||:.|.||..||||:::||:.
Zfish     9 SVQERPKWDNKVQYLLTCVGFAVGLGNIWRFPYLCQIYGGGAFLIPYLIALVFEGLPLLYLELAI 73

  Fly   118 GQYAALGPVAVYRRFCPLFRGLGTGMILVSAIVMLYYNLIIAWTIFYMFASFAPVLPWQNCEPAW 182
            ||....|.:.|:....||..|:|...::||.:|.|:||.|:||.::|.|.||...|||..| |. 
Zfish    74 GQSLRKGSIGVWHSISPLLGGVGVASMVVSFLVGLFYNTILAWVLWYFFHSFEDPLPWSQC-PI- 136

  Fly   183 STKYCFSYAQADQCEATNGTYYLRTCHNATSAAENNITTLALGALKRPPAEEYFNNFVLGLSKGI 247
                      .|..|.     |:..|.::|                  |...|:....|.:|..|
Zfish   137 ----------NDNLEG-----YVEECVSST------------------PVNYYWYRQTLNISPDI 168

  Fly   248 EETGSIKLSLAACLFLAWTIVFLCLCKGVQSSGKVVYFTALFPYVVLVILFVRGVTLPGASTGIL 312
            |::||::.:|..||..||:||::|..:|:::.||.||.||.|||:||.|..||.:|||||:.|:.
Zfish   169 EQSGSLQWTLVLCLATAWSIVYICFIRGIETIGKAVYVTATFPYLVLTIFLVRALTLPGATDGLQ 233

  Fly   313 FYLTPDWKQLANAQVWGDAAVQIFFALSPAWGGLITLSSYNKFSNNCYKDSLIVAFCNIATSFFA 377
            :..||||..|.|.|||.|||.||||:||.|:||||..||||...|:|.:|:|.|...|.|||.:|
Zfish   234 YLFTPDWTLLTNPQVWLDAATQIFFSLSLAFGGLIAFSSYNPKKNDCERDALFVGIINSATSLYA 298

  Fly   378 GLVIFSIIGFLA-----------------------------------HELNV-DVEKV------- 399
            .:.||:|:||.|                                   .:||. |.::|       
Zfish   299 SIPIFAILGFKATSNFNSCVNSNILDLTNAFDIGDRNITIENYDSWLRDLNASDPDRVSSLNLKH 363

  Fly   400 ------VDQ---GAGLAFIVYPEVVTRLPVSPVWAVLFFVMLLTLGLDSQFALMETVTTAILD-- 453
                  :||   |.||||||:.|.|..:|.|.||||||||||.:|||.|.|..:|.|.|.:||  
Zfish   364 CVLKNFLDQSASGTGLAFIVFTEAVIEMPGSQVWAVLFFVMLFSLGLSSMFGNLEGVLTPLLDLH 428

  Fly   454 RFPNLRQYKIWVVLSVAIFGYIGGLGFTTNSGMYWLQLMDKYAANWSVLLIAISECILIAWIYGS 518
            ..|.....:|:..| :.:..::..|.||..||.|||::.:.|..:..:|:||..|.|.:...||.
Zfish   429 MVPRWMPKEIFTGL-ICVVNFLVALIFTLGSGNYWLEIFNSYVGSVPLLVIAFFEIIAVVCFYGI 492

  Fly   519 QRFLNDIQGMIGKRSWFWNFFWGIMWRYITPATLLFILF----------------------FNWV 561
            :||.:||:.|.|:|.   |.||...|..|:|..||.:|.                      |...
Zfish   493 KRFSDDIEQMTGRRP---NLFWRCCWMGISPVMLLVVLVAYVVVQVQKHPTYPAWNPQYENFPET 554

  Fly   562 EYKPAKYGHYVYPMWADAVGWIVGLLPVLVIFLVAFQEIWRAPMSLSFRDRIKHLLQPTAEWGPA 626
            |.||       |..|..::..::..:||:.|.:||...:.|       |....|          :
Zfish   555 EEKP-------YSTWVFSICVLLSSVPVISIPIVALYRLIR-------RHTHPH----------S 595

  Fly   627 GRPCVNLHAERYQSQNYDGVTNTK 650
            |.|      ..|.:|:|...|:|:
Zfish   596 GYP------NPYTNQSYTDDTHTQ 613

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GlyTNP_611836.2 SNF 57..603 CDD:249680 228/621 (37%)
slc6a18NP_001108369.1 SLC5-6-like_sbd 12..587 CDD:294310 229/620 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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