DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5543 and LUG

DIOPT Version :9

Sequence 1:NP_611832.1 Gene:CG5543 / 37768 FlyBaseID:FBgn0034908 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_001190891.1 Gene:LUG / 829390 AraportID:AT4G32551 Length:969 Species:Arabidopsis thaliana


Alignment Length:517 Identity:94/517 - (18%)
Similarity:168/517 - (32%) Gaps:180/517 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 KESTEASGNGGGFKKMDKEQMIRQIEDVAEDLESQ----HLKEVMGISG---FGRKAAKVFDINE 90
            ::..:..|.|...:...:.|.:.|:.......:|.    |.:|.:|..|   .....:..|..||
plant   489 QQQNQQQGGGNPPQPQPQPQPLNQLALTNPQPQSSNHSIHQQEKLGGGGSITMDGSISNSFRGNE 553

  Fly    91 QIEKARVTRPGMDKKREESKPKEDDQKDEEEEDVIGPLP------PAVTT--------------- 134
            |:.|.:..|     ||::..............:..||.|      |:..|               
plant   554 QVLKNQSGR-----KRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPNLPHSGG 613

  Fly   135 ------------------------DKEKATKESSKDEDSDDDDYSSDEDSDDEQS------LAKR 169
                                    |.::..::.|.|::.  :.:.|.||.|...:      ::|.
plant   614 SSKSMMMFGTEGTGTLTSPSNQLADMDRFVEDGSLDDNV--ESFLSQEDGDQRDAVTRCMDVSKG 676

  Fly   170 IPYTHEVQMQ----------------------HGSRAVL----------------ALAGD----P 192
            ..:|....::                      |..:|||                |:..|    |
plant   677 FTFTEVNSVRASTTKVTCCHFSSDGKMLASAGHDKKAVLWYTDTMKPKTTLEEHTAMITDIRFSP 741

  Fly   193 SGARLVSGSIDYDMCFWDFAGMDSSMRSF----RQLQPCENHPIR-----------SLQY-SVTG 241
            |..||.:.|.|..:..||......|:|:|    ..:...:.|||:           .::| |:..
plant   742 SQLRLATSSFDKTVRVWDADNKGYSLRTFMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSINN 806

  Fly   242 DMILVI--SGNAQAKVLDRDGFEKLECCKGDQYISDMSRT----------------KGHVAQLTS 288
            .....:  .|:.|.:...|.|          :|::..|..                :||...:.|
plant   807 GSCTRVYKGGSTQIRFQPRVG----------KYLAASSANLVNVLDVETQAIRHSLQGHANPINS 861

  Fly   289 GCWHPFNREQFLTAALDGTLRIWQGLKSKEQLQVIKTRAQGGLRTNAASCNFNR---------DA 344
            .||.|..  .||.:..:..:::|          .:.|.::|.. .:..|||.|:         ..
plant   862 VCWDPSG--DFLASVSEDMVKVW----------TLGTGSEGEC-VHELSCNGNKFQSCVFHPAYP 913

  Fly   345 TLIAAGCVDGSIQTWDTRKMFVNTTHCVRDAHQKGSEITSIVFSYMGQQLATRSNDETMKLW 406
            :|:..||.. |::.|:   |..|.|..: .||:  ..|||:..|.....:|:.|:|:.:|||
plant   914 SLLVIGCYQ-SLELWN---MSENKTMTL-PAHE--GLITSLAVSTATGLVASASHDKLVKLW 968

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5543NP_611832.1 WD40 <172..519 CDD:225201 64/320 (20%)
WD40 180..497 CDD:295369 63/290 (22%)
WD40 repeat 185..227 CDD:293791 15/65 (23%)
WD40 repeat 233..268 CDD:293791 6/48 (13%)
WD40 repeat 273..329 CDD:293791 11/71 (15%)
WD40 repeat 337..374 CDD:293791 12/45 (27%)
WD40 repeat 382..419 CDD:293791 10/25 (40%)
WD40 repeat 427..469 CDD:293791
WD40 repeat 475..497 CDD:293791
LUGNP_001190891.1 LisH 10..36 CDD:285685
WD40 679..>969 CDD:225201 64/320 (20%)
WD40 681..969 CDD:238121 63/318 (20%)
WD40 repeat 692..729 CDD:293791 4/36 (11%)
WD40 repeat 735..772 CDD:293791 12/36 (33%)
WD40 repeat 777..814 CDD:293791 5/36 (14%)
WD40 repeat 820..853 CDD:293791 4/42 (10%)
WD40 repeat 859..899 CDD:293791 10/52 (19%)
WD40 repeat 907..938 CDD:293791 8/35 (23%)
WD40 repeat 944..968 CDD:293791 8/23 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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